Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC092638.2-201ENST00000441105 947 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC026191.1-204ENST00000517846 608 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 LZTS1-AS1-201ENST00000523103 892 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 MT3-203ENST00000565838 421 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC055811.3-201ENST00000584952 686 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 Metazoa_SRP.127-201ENST00000614914 302 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC009560.1-201ENST00000620208 434 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 ZMYND15-201ENST00000269289 2448 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 BBS1-203ENST00000455748 1552 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 LINC01815-202ENST00000641468 1409 ntBASIC14.8□□□□□ -0.04
VPS13AQ96RL7 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 LINC02021-201ENST00000504808 1608 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 TMEM222-204ENST00000466759 368 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AC079949.1-201ENST00000541419 505 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AC004554.1-201ENST00000422830 1468 ntBASIC14.8□□□□□ -0.04
VPS13AQ96RL7 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 NCAPH2-201ENST00000299821 1996 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AC022001.2-201ENST00000607849 580 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AC011471.3-201ENST00000623576 402 ntBASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AL603764.1-201ENST00000636452 321 ntBASIC14.8□□□□□ -0.04
VPS13AQ96RL7 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC14.8□□□□□ -0.04
VPS13AQ96RL7 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A21P-201ENST00000510875 1396 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A15P-201ENST00000514465 1395 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A6P-201ENST00000515148 1394 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A16P-201ENST00000526662 1395 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A9P-201ENST00000527940 1395 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A5P-201ENST00000528738 1395 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A14P-201ENST00000530386 1395 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FAM90A13P-201ENST00000534703 1395 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 CST1-201ENST00000304749 760 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 NDUFS7-203ENST00000414651 841 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 AC156455.1-203ENST00000423999 893 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 HLA-DPA2-205ENST00000433582 733 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 HLA-DQB2-232ENST00000437316 1214 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 S100A2-205ENST00000487430 752 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 ZNF226-201ENST00000300823 817 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 MT1E-202ENST00000330439 729 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 KRT17P5-201ENST00000332088 839 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 MESTP3-201ENST00000503460 968 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 KLF3-AS1-204ENST00000505240 567 ntTSL 4 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 TREHP1-201ENST00000531328 465 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 AL356756.1-201ENST00000550941 551 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 AC023090.1-201ENST00000592906 502 ntTSL 3 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 LINC01783-202ENST00000614408 828 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 BX284668.2-205ENST00000619677 828 ntBASIC14.79□□□□□ -0.04
VPS13AQ96RL7 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS13AQ96RL7 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms