Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AGER-203ENST00000375065 665 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 OARD1-212ENST00000482515 832 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 COX5BP1-201ENST00000507622 393 ntBASIC14.91□□□□□ -0.02
LMX1AQ8TE12 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AL008638.5-201ENST00000623814 1298 ntBASIC14.91□□□□□ -0.02
LMX1AQ8TE12 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 AL513523.2-202ENST00000427283 2040 ntBASIC14.91□□□□□ -0.02
LMX1AQ8TE12 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
LMX1AQ8TE12 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 COX14-203ENST00000550487 739 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 OR10B1P-201ENST00000601666 907 ntBASIC14.9□□□□□ -0.02
LMX1AQ8TE12 AL096828.3-201ENST00000615354 462 ntBASIC14.9□□□□□ -0.02
LMX1AQ8TE12 ANKRD30BP2-201ENST00000435744 1610 ntBASIC14.9□□□□□ -0.02
LMX1AQ8TE12 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 SMG1P3-206ENST00000522841 2774 ntTSL 2 BASIC14.9□□□□□ -0.02
LMX1AQ8TE12 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC14.89□□□□□ -0.03
LMX1AQ8TE12 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 86.3 ms