Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 KRT8P21-201ENST00000430398 1491 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 AC007319.1-202ENST00000412276 829 ntTSL 5 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 BRI3P1-201ENST00000440440 378 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 AC092638.2-201ENST00000441105 947 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 FABP5P3-202ENST00000477993 1027 ntTSL 5 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 AC027139.1-201ENST00000565286 951 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 DUX4L46-201ENST00000566845 751 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 MIR4683-201ENST00000579659 81 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 MIR6769A-201ENST00000617340 73 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 DDX5-235ENST00000630471 473 ntTSL 4 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 AC233280.19-201ENST00000633223 136 ntBASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 LINC01667-202ENST00000623919 1422 ntTSL 5 BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
SMC1BQ8NDV3 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 CLUHP2-201ENST00000426660 1303 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 UROS-201ENST00000368774 744 ntTSL 2 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 INS-IGF2-202ENST00000397270 828 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 HNRNPA1P58-201ENST00000403629 610 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 GCSHP3-201ENST00000431120 391 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC004837.1-201ENST00000446267 564 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AP000358.1-201ENST00000456260 156 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC004066.1-201ENST00000502488 802 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC084752.1-201ENST00000509766 622 ntBASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC008050.1-201ENST00000554926 632 ntTSL 3 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AL355916.2-201ENST00000556543 593 ntTSL 4 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AL590644.3-201ENST00000635428 1228 ntTSL 5 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
SMC1BQ8NDV3 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
SMC1BQ8NDV3 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 AL158070.2-201ENST00000623713 1621 ntBASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 EGLN1-201ENST00000366641 7097 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 TNNT3-201ENST00000278317 1210 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 CCDC167-201ENST00000373408 619 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 TNNT3-207ENST00000381589 1060 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 AC005618.3-201ENST00000624928 458 ntBASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC18.01■□□□□ 0.47
SMC1BQ8NDV3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms