Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AP001889.1-201ENST00000525414 633 ntBASIC14.33□□□□□ -0.12
BEST3Q8N1M1 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 APRT-204ENST00000563655 709 ntTSL 5 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 AP005482.1-201ENST00000563722 1273 ntBASIC14.33□□□□□ -0.12
BEST3Q8N1M1 AP001063.1-201ENST00000568332 529 ntBASIC14.33□□□□□ -0.12
BEST3Q8N1M1 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 COX11-210ENST00000639671 696 ntBASIC14.33□□□□□ -0.12
BEST3Q8N1M1 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
BEST3Q8N1M1 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ADGRA1-AS1-202ENST00000444433 2646 ntTSL 3 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 PDIA3P1-201ENST00000471856 1510 ntBASIC14.32□□□□□ -0.12
BEST3Q8N1M1 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 AC005229.1-201ENST00000392885 409 ntBASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 BAATP1-201ENST00000412284 1225 ntBASIC14.32□□□□□ -0.12
BEST3Q8N1M1 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 AC093433.1-201ENST00000458048 571 ntBASIC14.32□□□□□ -0.12
BEST3Q8N1M1 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 UBL5-208ENST00000593087 320 ntTSL 3 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ATF5-205ENST00000600336 682 ntTSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 RPS24-214ENST00000613865 538 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 WNT11-204ENST00000621122 789 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 TNFRSF14-AS1-201ENST00000416860 3522 ntTSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 MSTO2P-201ENST00000314835 1709 ntBASIC14.32□□□□□ -0.12
BEST3Q8N1M1 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.32□□□□□ -0.12
BEST3Q8N1M1 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 SEMA5B-206ENST00000451055 4579 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.32□□□□□ -0.12
BEST3Q8N1M1 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 BNIP2-201ENST00000267859 6325 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 CTBP2P5-201ENST00000454986 1264 ntBASIC14.31□□□□□ -0.12
BEST3Q8N1M1 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 AP001582.1-201ENST00000525856 295 ntBASIC14.31□□□□□ -0.12
BEST3Q8N1M1 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 IFT20-206ENST00000578122 834 ntTSL 2 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 IFT20-208ENST00000578985 831 ntTSL 3 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC14.31□□□□□ -0.12
BEST3Q8N1M1 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms