Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 INPP5K-204ENST00000421807 2988 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC17■□□□□ 0.31
CCDC60Q8IWA6 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 PES1-204ENST00000402284 2144 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 RUNX1-201ENST00000300305 6222 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AC023024.2-201ENST00000623561 1993 ntBASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 POM121L8P-201ENST00000417732 1281 ntBASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 ACTBP11-201ENST00000436287 1126 ntBASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 POM121L9P-203ENST00000441984 1285 ntBASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AC008808.1-201ENST00000508923 432 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC60Q8IWA6 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 LTF-203ENST00000426532 2494 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 AC245100.3-201ENST00000441281 285 ntBASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 RPL13AP20-201ENST00000459725 609 ntBASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 USB1-203ENST00000539737 1212 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MIR4538-201ENST00000581377 78 ntBASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 CNTLN-202ENST00000380647 5576 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 AC012508.2-201ENST00000567613 1472 ntBASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC60Q8IWA6 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 AP000845.1-201ENST00000581677 2131 ntBASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC60Q8IWA6 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms