Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PLIN4-202ENST00000633942 6484 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
RFX4Q33E94 MVB12B-206ENST00000489637 2666 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 ZNF587-203ENST00000423137 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 PNPLA6-202ENST00000414982 4522 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 KRT18P3-201ENST00000451602 1288 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.37□□□□□ -0.11
RFX4Q33E94 IGHV3OR16-6-201ENST00000568775 360 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 AC011530.1-201ENST00000593999 558 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 CAND2-206ENST00000626378 333 ntTSL 5 BASIC14.37□□□□□ -0.11
RFX4Q33E94 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.37□□□□□ -0.11
RFX4Q33E94 AC005252.3-201ENST00000623855 2258 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 AC084364.1-201ENST00000551967 1556 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 JADE2-203ENST00000395003 6465 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 ADAMTS7P1-201ENST00000613213 4793 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
RFX4Q33E94 AC010327.5-201ENST00000586923 3061 ntBASIC14.37□□□□□ -0.11
RFX4Q33E94 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC14.37□□□□□ -0.11
RFX4Q33E94 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 ACSM1-201ENST00000307493 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC14.37□□□□□ -0.11
RFX4Q33E94 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
RFX4Q33E94 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 MAX-219ENST00000618858 2141 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 CHRNB4-201ENST00000261751 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 KIAA0319-203ENST00000535378 6896 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
RFX4Q33E94 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 MIR346-201ENST00000362234 95 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX4Q33E94 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 AL590627.1-203ENST00000421194 1026 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX4Q33E94 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX4Q33E94 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 AC034213.1-201ENST00000507681 806 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX4Q33E94 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX4Q33E94 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC14.36□□□□□ -0.11
RFX4Q33E94 HNRNPUP1-201ENST00000554987 333 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 COQ9-214ENST00000567933 882 ntTSL 3 BASIC14.36□□□□□ -0.11
RFX4Q33E94 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
RFX4Q33E94 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 AL121894.2-201ENST00000602977 491 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 AC097359.3-201ENST00000603982 1210 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 AC027601.4-201ENST00000611259 610 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 AC091812.2-201ENST00000619081 385 ntBASIC14.36□□□□□ -0.11
RFX4Q33E94 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC14.36□□□□□ -0.11
RFX4Q33E94 FAM84B-201ENST00000304916 5404 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
RFX4Q33E94 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.36□□□□□ -0.11
RFX4Q33E94 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 PPIL6-202ENST00000424445 4031 ntTSL 5 BASIC14.36□□□□□ -0.11
RFX4Q33E94 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
RFX4Q33E94 ACVR1B-206ENST00000542485 2362 ntTSL 2 BASIC14.36□□□□□ -0.11
RFX4Q33E94 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 RAPGEF4-201ENST00000397081 4299 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 TMEM230-202ENST00000342308 1562 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 MBLAC2-202ENST00000514906 1936 ntBASIC14.35□□□□□ -0.11
RFX4Q33E94 SDR42E2-201ENST00000602312 2630 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 NEK10-206ENST00000429845 4250 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
RFX4Q33E94 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 PDRG1-201ENST00000202017 1998 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 ZNF618-207ENST00000615615 9289 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
RFX4Q33E94 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
RFX4Q33E94 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 53.4 ms