Protein–RNA interactions for Protein: P62987

UBA52, Ubiquitin-60S ribosomal protein L40, humanhuman

Known RBP Predictions only

Length 128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBA52P62987 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 CD81-202ENST00000381036 880 ntTSL 3 BASIC13.39□□□□□ -0.27
UBA52P62987 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC13.39□□□□□ -0.27
UBA52P62987 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC13.39□□□□□ -0.27
UBA52P62987 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC13.39□□□□□ -0.27
UBA52P62987 AC241585.1-201ENST00000433527 519 ntBASIC13.39□□□□□ -0.27
UBA52P62987 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 MIR3909-201ENST00000579518 119 ntBASIC13.39□□□□□ -0.27
UBA52P62987 AP001350.2-201ENST00000625104 1094 ntBASIC13.39□□□□□ -0.27
UBA52P62987 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC13.39□□□□□ -0.27
UBA52P62987 AL358472.5-202ENST00000641448 1267 ntBASIC13.39□□□□□ -0.27
UBA52P62987 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 CHD1-212ENST00000614616 8095 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
UBA52P62987 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC13.39□□□□□ -0.27
UBA52P62987 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC13.39□□□□□ -0.27
UBA52P62987 REXO1L1P-202ENST00000608646 1974 ntBASIC13.39□□□□□ -0.27
UBA52P62987 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC13.39□□□□□ -0.27
UBA52P62987 PRSS30P-201ENST00000390681 2881 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.39□□□□□ -0.27
UBA52P62987 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
UBA52P62987 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.39□□□□□ -0.27
UBA52P62987 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.39□□□□□ -0.27
UBA52P62987 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 LINC00174-204ENST00000421767 4702 ntTSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 SEC24D-202ENST00000419654 2786 ntTSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 CAMKK2-209ENST00000446440 2587 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC13.38□□□□□ -0.27
UBA52P62987 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 MIR346-201ENST00000362234 95 ntBASIC13.38□□□□□ -0.27
UBA52P62987 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 AC092580.3-201ENST00000430932 139 ntBASIC13.38□□□□□ -0.27
UBA52P62987 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC13.38□□□□□ -0.27
UBA52P62987 CRB3P1-201ENST00000449338 276 ntBASIC13.38□□□□□ -0.27
UBA52P62987 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC13.38□□□□□ -0.27
UBA52P62987 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC13.38□□□□□ -0.27
UBA52P62987 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.38□□□□□ -0.27
UBA52P62987 MIR4453-201ENST00000584019 89 ntBASIC13.38□□□□□ -0.27
UBA52P62987 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC13.38□□□□□ -0.27
UBA52P62987 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 AC007920.1-201ENST00000356133 2674 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
UBA52P62987 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 STX18-AS1-207ENST00000610009 2406 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
UBA52P62987 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 ARVCF-203ENST00000406259 2871 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
UBA52P62987 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 MAP3K4-201ENST00000348824 5295 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
UBA52P62987 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 SPOCK3-210ENST00000506886 2947 ntAPPRIS ALT2 TSL 5 BASIC13.37□□□□□ -0.27
UBA52P62987 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 AJ011931.1-201ENST00000618749 2492 ntBASIC13.37□□□□□ -0.27
UBA52P62987 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 EPHA2-201ENST00000358432 3964 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 AL512652.2-201ENST00000625156 1716 ntBASIC13.37□□□□□ -0.27
UBA52P62987 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC13.37□□□□□ -0.27
UBA52P62987 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC13.37□□□□□ -0.27
UBA52P62987 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC13.37□□□□□ -0.27
UBA52P62987 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.37□□□□□ -0.27
UBA52P62987 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
UBA52P62987 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC13.37□□□□□ -0.27
UBA52P62987 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms