Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
PTPN9P43378 PGGT1B-202ENST00000379615 903 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 DGCR5-201ENST00000399539 862 ntBASIC15.95■□□□□ 0.14
PTPN9P43378 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 AL162726.2-201ENST00000438986 1017 ntBASIC15.95■□□□□ 0.14
PTPN9P43378 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.95■□□□□ 0.14
PTPN9P43378 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC15.95■□□□□ 0.14
PTPN9P43378 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC15.95■□□□□ 0.14
PTPN9P43378 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC15.95■□□□□ 0.14
PTPN9P43378 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC15.95■□□□□ 0.14
PTPN9P43378 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 AC005252.2-201ENST00000624630 1141 ntBASIC15.95■□□□□ 0.14
PTPN9P43378 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
PTPN9P43378 AJ011931.1-201ENST00000618749 2492 ntBASIC15.95■□□□□ 0.14
PTPN9P43378 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC15.95■□□□□ 0.14
PTPN9P43378 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
PTPN9P43378 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 LINC01101-201ENST00000622953 1884 ntBASIC15.95■□□□□ 0.14
PTPN9P43378 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
PTPN9P43378 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 AC010327.3-201ENST00000591665 1643 ntTSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 TSPY26P-202ENST00000565928 3884 ntBASIC15.94■□□□□ 0.14
PTPN9P43378 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
PTPN9P43378 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PTPN9P43378 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 MAGEA12-203ENST00000393900 1299 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.94■□□□□ 0.14
PTPN9P43378 AL139094.1-201ENST00000405549 1188 ntBASIC15.94■□□□□ 0.14
PTPN9P43378 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC15.94■□□□□ 0.14
PTPN9P43378 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC15.94■□□□□ 0.14
PTPN9P43378 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 AP001582.1-201ENST00000525856 295 ntBASIC15.94■□□□□ 0.14
PTPN9P43378 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.94■□□□□ 0.14
PTPN9P43378 AC138761.1-201ENST00000584393 385 ntBASIC15.94■□□□□ 0.14
PTPN9P43378 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
PTPN9P43378 EHF-210ENST00000531794 1481 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
PTPN9P43378 AL157414.3-201ENST00000624276 1954 ntBASIC15.94■□□□□ 0.14
PTPN9P43378 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.94■□□□□ 0.14
PTPN9P43378 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
PTPN9P43378 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 CLDN22-201ENST00000323319 2581 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
PTPN9P43378 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC15.93■□□□□ 0.14
PTPN9P43378 AC013726.1-201ENST00000563747 2285 ntBASIC15.93■□□□□ 0.14
PTPN9P43378 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.93■□□□□ 0.14
PTPN9P43378 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.93■□□□□ 0.14
PTPN9P43378 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.93■□□□□ 0.14
PTPN9P43378 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.93■□□□□ 0.14
PTPN9P43378 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
PTPN9P43378 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC15.93■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms