Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC15.5■□□□□ 0.07
VCANP13611 EEF1DP7-201ENST00000580496 513 ntBASIC15.5■□□□□ 0.07
VCANP13611 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.5■□□□□ 0.07
VCANP13611 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 CCDC51-206ENST00000447018 1461 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 RAN-210ENST00000541630 1475 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.5■□□□□ 0.07
VCANP13611 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.5■□□□□ 0.07
VCANP13611 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 CIDEC-205ENST00000443115 443 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 AC020904.3-201ENST00000624199 442 ntBASIC15.5■□□□□ 0.07
VCANP13611 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC15.49■□□□□ 0.07
VCANP13611 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
VCANP13611 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 MIR1301-201ENST00000408518 82 ntBASIC15.49■□□□□ 0.07
VCANP13611 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC15.49■□□□□ 0.07
VCANP13611 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC15.49■□□□□ 0.07
VCANP13611 NF1P11-201ENST00000621292 1282 ntBASIC15.49■□□□□ 0.07
VCANP13611 HIST1H3B-201ENST00000621411 411 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VCANP13611 LINC01669-201ENST00000623161 413 ntTSL 3 BASIC15.49■□□□□ 0.07
VCANP13611 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 AL008718.2-201ENST00000609206 1313 ntBASIC15.49■□□□□ 0.07
VCANP13611 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 KRTAP1-3-201ENST00000344363 972 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VCANP13611 AC105254.1-201ENST00000507782 621 ntTSL 4 BASIC15.49■□□□□ 0.07
VCANP13611 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 NAT9-219ENST00000582524 573 ntTSL 4 BASIC15.49■□□□□ 0.07
VCANP13611 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC15.49■□□□□ 0.07
VCANP13611 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.49■□□□□ 0.07
VCANP13611 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC15.49■□□□□ 0.07
VCANP13611 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 HLF-202ENST00000430986 1385 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC15.49■□□□□ 0.07
VCANP13611 MRPL23-204ENST00000397297 613 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 AC098657.1-201ENST00000416270 1135 ntBASIC15.49■□□□□ 0.07
VCANP13611 RPL3P5-201ENST00000441645 1232 ntBASIC15.49■□□□□ 0.07
VCANP13611 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.49■□□□□ 0.07
VCANP13611 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC15.49■□□□□ 0.07
VCANP13611 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
VCANP13611 AC140113.1-201ENST00000603467 169 ntBASIC15.49■□□□□ 0.07
VCANP13611 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC15.49■□□□□ 0.07
VCANP13611 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 BCCIP-203ENST00000368759 1433 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
VCANP13611 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.48■□□□□ 0.07
VCANP13611 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC15.48■□□□□ 0.07
VCANP13611 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.48■□□□□ 0.07
VCANP13611 BX248123.1-201ENST00000429070 606 ntTSL 3 BASIC15.48■□□□□ 0.07
VCANP13611 AC007952.4-201ENST00000573866 637 ntBASIC15.48■□□□□ 0.07
VCANP13611 AC055811.4-201ENST00000624039 1754 ntBASIC15.48■□□□□ 0.07
VCANP13611 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC15.48■□□□□ 0.07
VCANP13611 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
VCANP13611 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 FERD3L-201ENST00000275461 640 ntAPPRIS P1 BASIC15.48■□□□□ 0.07
VCANP13611 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC15.48■□□□□ 0.07
VCANP13611 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
VCANP13611 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
VCANP13611 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.47■□□□□ 0.07
VCANP13611 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
VCANP13611 AQP7-202ENST00000377425 1068 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VCANP13611 KRTAP2-2-201ENST00000398477 733 ntAPPRIS P2 BASIC15.47■□□□□ 0.07
VCANP13611 AL807761.2-201ENST00000422849 729 ntBASIC15.47■□□□□ 0.07
VCANP13611 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC15.47■□□□□ 0.07
VCANP13611 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC15.47■□□□□ 0.07
VCANP13611 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC15.47■□□□□ 0.07
VCANP13611 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC15.47■□□□□ 0.07
VCANP13611 GGT3P-204ENST00000453783 1664 ntBASIC15.47■□□□□ 0.07
VCANP13611 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
VCANP13611 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC15.47■□□□□ 0.07
VCANP13611 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
VCANP13611 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
VCANP13611 COQ3-201ENST00000254759 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms