Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 REXO1L6P-201ENST00000603433 1515 ntBASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 KIAA1211-203ENST00000504228 4628 ntAPPRIS P2 TSL 5 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 AC025279.2-201ENST00000569730 653 ntBASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 RHOXF1P1-202ENST00000635473 501 ntBASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 AC068587.6-202ENST00000641839 5619 ntBASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 AC013268.4-201ENST00000637413 2228 ntBASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 AP001582.1-201ENST00000525856 295 ntBASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 AC132938.4-201ENST00000623835 848 ntBASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 AC008687.7-202ENST00000637404 953 ntBASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 PRSS30P-206ENST00000641773 873 ntBASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
TRAIPQ9BWF2 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 AC023824.1-201ENST00000562945 2975 ntBASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 C2orf27AP3-201ENST00000434123 579 ntBASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 ACTBP11-201ENST00000436287 1126 ntBASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 AL355994.2-201ENST00000447882 704 ntBASIC16.84■□□□□ 0.29
TRAIPQ9BWF2 KRT18P25-201ENST00000508931 1278 ntBASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms