Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 DNAJB3-202ENST00000449667 1266 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 SPDYE11-202ENST00000450699 704 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 AL139010.1-201ENST00000454878 894 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 AC092183.1-201ENST00000469884 875 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 LINC01225-203ENST00000563550 1244 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 SPDYE9P-201ENST00000570642 692 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 NAA38-207ENST00000576861 556 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 SPDYE10P-202ENST00000612005 668 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 SPDYE8P-202ENST00000612377 668 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 GOLGA8DP-202ENST00000341390 2184 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 AC005899.8-201ENST00000625127 3153 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CDT1-201ENST00000301019 3240 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 AP3S2-216ENST00000617003 1561 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 PTENP1-202ENST00000532280 3996 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 GPKOW-201ENST00000156109 1742 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 TMBIM4-202ENST00000358230 2952 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 ZBED1P1-201ENST00000502364 1930 ntBASIC13.52□□□□□ -0.24
NKX3-1Q99801 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC13.52□□□□□ -0.24
NKX3-1Q99801 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 KCP-203ENST00000610776 5108 ntTSL 5 BASIC13.52□□□□□ -0.24
NKX3-1Q99801 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.52□□□□□ -0.24
NKX3-1Q99801 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC13.52□□□□□ -0.24
NKX3-1Q99801 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC13.52□□□□□ -0.24
NKX3-1Q99801 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 AC069335.1-201ENST00000489972 472 ntBASIC13.52□□□□□ -0.25
NKX3-1Q99801 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 RET-201ENST00000340058 4149 ntAPPRIS ALT2 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 SEZ6L-202ENST00000343706 2898 ntTSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 CRCP-203ENST00000395326 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.52□□□□□ -0.25
NKX3-1Q99801 GSG1L-203ENST00000447459 4916 ntAPPRIS P3 TSL 2 BASIC13.52□□□□□ -0.25
NKX3-1Q99801 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 SLC4A7-210ENST00000440156 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 AC079781.5-202ENST00000641784 3743 ntBASIC13.51□□□□□ -0.25
NKX3-1Q99801 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 TMPRSS2-202ENST00000398585 3240 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
NKX3-1Q99801 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC13.51□□□□□ -0.25
NKX3-1Q99801 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC13.51□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.5 ms