Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.13□□□□□ -0.31
COL12A1Q99715 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 LTB4R2-202ENST00000528054 3092 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 MYH16-204ENST00000452010 1599 ntTSL 5 BASIC13.13□□□□□ -0.31
COL12A1Q99715 EEF1B2-203ENST00000392222 1098 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 STK16-203ENST00000409516 895 ntTSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 RPL14-203ENST00000416518 812 ntTSL 3 BASIC13.13□□□□□ -0.31
COL12A1Q99715 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 KLF2P1-201ENST00000447438 1042 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 SOX2-OT-208ENST00000477928 902 ntTSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 AC007656.1-201ENST00000552238 573 ntTSL 4 BASIC13.13□□□□□ -0.31
COL12A1Q99715 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL12A1Q99715 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC13.13□□□□□ -0.31
COL12A1Q99715 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC13.13□□□□□ -0.31
COL12A1Q99715 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC13.13□□□□□ -0.31
COL12A1Q99715 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.13□□□□□ -0.31
COL12A1Q99715 AC025183.3-201ENST00000623526 1482 ntBASIC13.13□□□□□ -0.31
COL12A1Q99715 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC13.12□□□□□ -0.31
COL12A1Q99715 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 FAM227B-212ENST00000561064 1596 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 CICP11-201ENST00000434745 2827 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 WT1-209ENST00000530998 2421 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 Z95624.1-201ENST00000413528 628 ntTSL 5 BASIC13.12□□□□□ -0.31
COL12A1Q99715 VDAC1P1-201ENST00000439229 848 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC13.12□□□□□ -0.31
COL12A1Q99715 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC13.12□□□□□ -0.31
COL12A1Q99715 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC13.12□□□□□ -0.31
COL12A1Q99715 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC13.12□□□□□ -0.31
COL12A1Q99715 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 AL109837.1-201ENST00000603272 613 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 LINC01783-202ENST00000614408 828 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 BX284668.2-205ENST00000619677 828 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 ING4-207ENST00000446105 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC13.12□□□□□ -0.31
COL12A1Q99715 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC13.12□□□□□ -0.31
COL12A1Q99715 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 LINC01815-202ENST00000641468 1409 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 SPATS1-202ENST00000323108 1107 ntAPPRIS P2 TSL 5 BASIC13.12□□□□□ -0.31
COL12A1Q99715 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 DEPDC1-AS1-201ENST00000428732 1247 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC13.12□□□□□ -0.31
COL12A1Q99715 AL365275.1-201ENST00000518570 471 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC13.12□□□□□ -0.31
COL12A1Q99715 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC13.12□□□□□ -0.31
COL12A1Q99715 HCG18-241ENST00000602290 821 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC13.12□□□□□ -0.31
COL12A1Q99715 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 AC006449.6-201ENST00000612330 2296 ntBASIC13.12□□□□□ -0.31
COL12A1Q99715 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.12□□□□□ -0.31
COL12A1Q99715 FGF14-202ENST00000376143 744 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 AC023906.1-201ENST00000486386 453 ntBASIC13.11□□□□□ -0.31
COL12A1Q99715 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC13.11□□□□□ -0.31
COL12A1Q99715 AC020931.1-201ENST00000589622 1346 ntBASIC13.11□□□□□ -0.31
COL12A1Q99715 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 FAM168A-202ENST00000356467 1767 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 AMHR2-201ENST00000257863 1863 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.11□□□□□ -0.31
COL12A1Q99715 MAOB-201ENST00000378069 2566 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
COL12A1Q99715 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC13.11□□□□□ -0.31
COL12A1Q99715 PRAME-206ENST00000406503 740 ntAPPRIS ALT2 TSL 5 BASIC13.11□□□□□ -0.31
COL12A1Q99715 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.11□□□□□ -0.31
COL12A1Q99715 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC13.11□□□□□ -0.31
COL12A1Q99715 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC13.11□□□□□ -0.31
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms