Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 XG-202ENST00000419513 979 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 AC090001.1-201ENST00000553194 467 ntTSL 3 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 AL109837.1-201ENST00000603272 613 ntBASIC14.83□□□□□ -0.04
VPS13AQ96RL7 MIR6769A-201ENST00000617340 73 ntBASIC14.83□□□□□ -0.04
VPS13AQ96RL7 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
VPS13AQ96RL7 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 IQCE-212ENST00000476665 2400 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AL672207.1-201ENST00000328462 1570 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 NAA60-203ENST00000414063 2619 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 CYP4B1-202ENST00000371919 1494 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AL390778.2-201ENST00000420883 886 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 PUDPP3-201ENST00000445368 636 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 EIF5A2-205ENST00000487522 565 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 LINC02176-201ENST00000569104 598 ntTSL 4 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 MBP-238ENST00000580402 915 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 CR392039.1-201ENST00000623217 204 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AL451007.2-201ENST00000632004 563 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 FRMD6-AS1-201ENST00000617151 2229 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 SLC50A1-202ENST00000368401 1166 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 LIF-202ENST00000403987 592 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AC019118.2-201ENST00000425776 718 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AL354861.1-201ENST00000445213 355 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 PIGT-208ENST00000545755 1158 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 DBP-202ENST00000593500 712 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AC009242.1-201ENST00000634300 2706 ntTSL 5 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC14.82□□□□□ -0.04
VPS13AQ96RL7 AC026471.1-201ENST00000564629 3026 ntBASIC14.82□□□□□ -0.04
VPS13AQ96RL7 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 MC3R-201ENST00000243911 1084 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 SNX11-210ENST00000582104 1282 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC106774.7-201ENST00000638408 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC106774.6-201ENST00000638483 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC233724.20-201ENST00000638842 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC233724.19-201ENST00000639969 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC106774.5-201ENST00000640558 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC233724.18-201ENST00000640803 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC233724.21-201ENST00000640846 597 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 A1BG-AS1-204ENST00000595302 2130 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 LCE2C-201ENST00000368783 614 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 PLA2G2A-202ENST00000400520 974 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC012507.1-201ENST00000454890 600 ntTSL 4 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC022616.1-201ENST00000518688 554 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 AC073592.2-201ENST00000623062 780 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 CTSL-201ENST00000340342 1436 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC14.81□□□□□ -0.04
VPS13AQ96RL7 HLA-DMA-203ENST00000395305 777 ntBASIC14.81□□□□□ -0.04
VPS13AQ96RL7 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms