Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 SOD2-202ENST00000367054 815 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AL627389.1-201ENST00000413508 1182 ntBASIC19.88■□□□□ 0.77
USP54Q70EL1 MIR4435-2HG-204ENST00000419736 777 ntTSL 3 BASIC19.88■□□□□ 0.77
USP54Q70EL1 PFN2-202ENST00000423691 911 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AC098934.1-204ENST00000430114 631 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 BX276092.5-201ENST00000439926 886 ntTSL 5 BASIC19.88■□□□□ 0.77
USP54Q70EL1 ZNF529-AS1-201ENST00000448373 1004 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AP002387.1-201ENST00000529369 680 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AP001160.1-201ENST00000535817 565 ntTSL 3 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC19.88■□□□□ 0.77
USP54Q70EL1 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AC242376.2-201ENST00000619355 883 ntBASIC19.88■□□□□ 0.77
USP54Q70EL1 AC011491.1-203ENST00000637688 543 ntBASIC19.88■□□□□ 0.77
USP54Q70EL1 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 MCM7-202ENST00000343023 1968 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 IL1RAP-209ENST00000422940 1957 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USP54Q70EL1 DIAPH2-202ENST00000355827 3782 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
USP54Q70EL1 AC023632.2-201ENST00000523011 1789 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 RGS6-217ENST00000555571 1764 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 ELOVL1-201ENST00000372458 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC19.88■□□□□ 0.77
USP54Q70EL1 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.88■□□□□ 0.77
USP54Q70EL1 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USP54Q70EL1 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
USP54Q70EL1 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 MSC-AS1-204ENST00000518916 864 ntTSL 3 BASIC19.87■□□□□ 0.77
USP54Q70EL1 IGHVIII-5-2-201ENST00000522505 261 ntBASIC19.87■□□□□ 0.77
USP54Q70EL1 UBE3B-206ENST00000536398 1120 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 AP005264.1-201ENST00000586226 733 ntTSL 3 BASIC19.87■□□□□ 0.77
USP54Q70EL1 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 AC009145.4-201ENST00000625119 1294 ntBASIC19.87■□□□□ 0.77
USP54Q70EL1 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC19.87■□□□□ 0.77
USP54Q70EL1 AHCYP4-201ENST00000419201 1315 ntBASIC19.87■□□□□ 0.77
USP54Q70EL1 SUGP2-202ENST00000337018 3640 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC19.87■□□□□ 0.77
USP54Q70EL1 PORCN-204ENST00000361988 1672 ntAPPRIS ALT1 TSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC19.87■□□□□ 0.77
USP54Q70EL1 TRO-205ENST00000399736 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC19.87■□□□□ 0.77
USP54Q70EL1 AC005632.3-201ENST00000605544 308 ntBASIC19.87■□□□□ 0.77
USP54Q70EL1 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
USP54Q70EL1 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC19.87■□□□□ 0.77
USP54Q70EL1 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USP54Q70EL1 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC19.87■□□□□ 0.77
USP54Q70EL1 DEPDC7-201ENST00000241051 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 POLL-204ENST00000370168 1536 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 ATP6V1E1-202ENST00000399796 1208 ntTSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 RHBDD2-203ENST00000428119 1274 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC19.86■□□□□ 0.77
USP54Q70EL1 AL035414.1-201ENST00000451327 857 ntBASIC19.86■□□□□ 0.77
USP54Q70EL1 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 ENDOV-229ENST00000523999 864 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC19.86■□□□□ 0.77
USP54Q70EL1 PGPEP1-206ENST00000597431 545 ntTSL 5 BASIC19.86■□□□□ 0.77
USP54Q70EL1 AC073352.2-201ENST00000609385 439 ntBASIC19.86■□□□□ 0.77
USP54Q70EL1 COX6A1P2-201ENST00000620597 330 ntBASIC19.86■□□□□ 0.77
USP54Q70EL1 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 MVK-217ENST00000639206 367 ntTSL 5 BASIC19.86■□□□□ 0.77
USP54Q70EL1 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USP54Q70EL1 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
USP54Q70EL1 ETNPPL-201ENST00000296486 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
USP54Q70EL1 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
USP54Q70EL1 GLT1D1-201ENST00000281703 2725 ntTSL 2 BASIC19.85■□□□□ 0.77
USP54Q70EL1 KDSR-201ENST00000326575 1024 ntTSL 2 BASIC19.85■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms