Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 AC103691.2-201ENST00000618824 433 ntBASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 MLLT10-216ENST00000621220 381 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 INE2-201ENST00000630399 1874 ntBASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CNKSR3Q6P9H4 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC011840.2-201ENST00000563063 1520 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 TCL1B-201ENST00000340722 1166 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 VDAC1P1-201ENST00000439229 848 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC098935.1-201ENST00000446057 611 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 FGFR3P1-201ENST00000449999 601 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 EFCAB10-201ENST00000460135 717 ntTSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC145343.1-201ENST00000579629 650 ntTSL 3 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 NAT9-212ENST00000581136 1011 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MIR4754-201ENST00000582477 89 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC008805.1-201ENST00000590892 364 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 TLDC2-203ENST00000602922 1179 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC008825.2-201ENST00000603374 718 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 COX6A1P2-201ENST00000620597 330 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 AC011491.1-203ENST00000637688 543 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 PCDHA14-201ENST00000506751 2298 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 MST1L-201ENST00000442552 2185 ntBASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
CNKSR3Q6P9H4 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 DLX4-202ENST00000411890 1404 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AL008718.2-201ENST00000609206 1313 ntBASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AMT-239ENST00000636865 1914 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 TNNT2-206ENST00000367320 1007 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 CDK7-214ENST00000626796 358 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
CNKSR3Q6P9H4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 53.3 ms