Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 AC008825.2-201ENST00000603374 718 ntBASIC10.73□□□□□ -0.69
PRKDCP78527 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC10.73□□□□□ -0.69
PRKDCP78527 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 SNX3-204ENST00000426155 1072 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 RGS5-216ENST00000449680 788 ntTSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 NAT9-219ENST00000582524 573 ntTSL 4 BASIC10.72□□□□□ -0.69
PRKDCP78527 Metazoa_SRP.75-201ENST00000614439 293 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 ADAMTS9-AS1-216ENST00000626280 882 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 PRMT2-216ENST00000621201 1301 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 MIR3936HG-204ENST00000621103 1793 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 AC004066.1-201ENST00000502488 802 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 EHF-205ENST00000527935 557 ntTSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 AC245369.7-201ENST00000631386 350 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 AC004706.3-207ENST00000634823 977 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 EZH2-202ENST00000350995 2477 ntAPPRIS ALT1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 ZBTB45P1-201ENST00000452761 1456 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC10.72□□□□□ -0.69
PRKDCP78527 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 SNORA57-201ENST00000383870 149 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 PGAM1P11-201ENST00000416729 680 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 XBP1P1-201ENST00000436573 652 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 TMEM123-208ENST00000532161 743 ntAPPRIS ALT2 TSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 AC093503.1-201ENST00000593888 495 ntTSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC10.72□□□□□ -0.69
PRKDCP78527 AC020922.4-201ENST00000621389 339 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 PCDHB19P-201ENST00000570871 2371 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC10.72□□□□□ -0.69
PRKDCP78527 AC018470.1-201ENST00000624790 3129 ntBASIC10.72□□□□□ -0.69
PRKDCP78527 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC10.72□□□□□ -0.69
PRKDCP78527 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
PRKDCP78527 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 FXYD3-208ENST00000604404 1322 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 HIST1H1B-201ENST00000331442 681 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
PRKDCP78527 GGTLC4P-201ENST00000402176 664 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 AC098657.1-201ENST00000416270 1135 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 AC090136.2-201ENST00000517809 420 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 OR5BD1P-201ENST00000532527 817 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 AC090825.1-202ENST00000560059 665 ntTSL 3 BASIC10.71□□□□□ -0.69
PRKDCP78527 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC10.71□□□□□ -0.69
PRKDCP78527 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC10.71□□□□□ -0.69
PRKDCP78527 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 PES1-204ENST00000402284 2144 ntTSL 5 BASIC10.71□□□□□ -0.69
PRKDCP78527 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 IQCJ-201ENST00000397832 1460 ntAPPRIS ALT2 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 AC092364.2-201ENST00000596710 2692 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC10.71□□□□□ -0.69
PRKDCP78527 MRPL18-201ENST00000367034 978 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.69
PRKDCP78527 DKKL1P1-201ENST00000400550 698 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC10.71□□□□□ -0.69
PRKDCP78527 OR2R1P-201ENST00000441404 914 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC10.71□□□□□ -0.69
PRKDCP78527 AC112484.2-201ENST00000498297 1298 ntTSL 3 BASIC10.71□□□□□ -0.69
PRKDCP78527 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC10.71□□□□□ -0.69
PRKDCP78527 AC092756.1-201ENST00000560248 448 ntTSL 3 BASIC10.71□□□□□ -0.69
PRKDCP78527 AL022334.2-201ENST00000610000 484 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 TARM1-202ENST00000616041 1218 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
PRKDCP78527 AC139713.2-207ENST00000641556 1292 ntBASIC10.71□□□□□ -0.69
PRKDCP78527 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC10.71□□□□□ -0.69
PRKDCP78527 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 KIAA1586-201ENST00000370733 2933 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
PRKDCP78527 UQCC2-204ENST00000607484 1314 ntAPPRIS P1 TSL 1 (best) BASIC10.71□□□□□ -0.7
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms