Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 ELOF1-205ENST00000589171 743 ntTSL 3 BASIC16.11■□□□□ 0.17
HDAC4P56524 AL132655.2-201ENST00000596276 594 ntBASIC16.11■□□□□ 0.17
HDAC4P56524 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC16.11■□□□□ 0.17
HDAC4P56524 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.11■□□□□ 0.17
HDAC4P56524 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC16.11■□□□□ 0.17
HDAC4P56524 PTGES3L-AARSD1-204ENST00000421990 2150 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
HDAC4P56524 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.11■□□□□ 0.17
HDAC4P56524 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDAC4P56524 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC16.11■□□□□ 0.17
HDAC4P56524 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDAC4P56524 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDAC4P56524 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
HDAC4P56524 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDAC4P56524 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC16.11■□□□□ 0.17
HDAC4P56524 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.11■□□□□ 0.17
HDAC4P56524 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
HDAC4P56524 DRD5P1-201ENST00000456605 1438 ntBASIC16.11■□□□□ 0.17
HDAC4P56524 AGAP7P-201ENST00000582299 2062 ntBASIC16.1■□□□□ 0.17
HDAC4P56524 AGAP14-201ENST00000624701 2060 ntBASIC16.1■□□□□ 0.17
HDAC4P56524 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.1■□□□□ 0.17
HDAC4P56524 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.1■□□□□ 0.17
HDAC4P56524 DFFBP1-201ENST00000433250 979 ntBASIC16.1■□□□□ 0.17
HDAC4P56524 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC16.1■□□□□ 0.17
HDAC4P56524 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 FADS2-205ENST00000517839 469 ntTSL 3 BASIC16.1■□□□□ 0.17
HDAC4P56524 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.1■□□□□ 0.17
HDAC4P56524 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC16.1■□□□□ 0.17
HDAC4P56524 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.1■□□□□ 0.17
HDAC4P56524 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC16.1■□□□□ 0.17
HDAC4P56524 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.1■□□□□ 0.17
HDAC4P56524 AC006058.4-201ENST00000624016 1670 ntBASIC16.1■□□□□ 0.17
HDAC4P56524 MEN1-207ENST00000377326 3150 ntAPPRIS ALT1 TSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.1■□□□□ 0.17
HDAC4P56524 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
HDAC4P56524 TNRC18P2-201ENST00000417666 2714 ntBASIC16.1■□□□□ 0.17
HDAC4P56524 AC007541.1-201ENST00000570282 1469 ntBASIC16.1■□□□□ 0.17
HDAC4P56524 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
HDAC4P56524 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HDAC4P56524 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.09■□□□□ 0.17
HDAC4P56524 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.09■□□□□ 0.17
HDAC4P56524 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.09■□□□□ 0.17
HDAC4P56524 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 AC098850.1-201ENST00000419919 790 ntBASIC16.09■□□□□ 0.17
HDAC4P56524 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.09■□□□□ 0.17
HDAC4P56524 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
HDAC4P56524 OARD1-208ENST00000469104 704 ntTSL 2 BASIC16.09■□□□□ 0.17
HDAC4P56524 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.09■□□□□ 0.17
HDAC4P56524 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC16.09■□□□□ 0.17
HDAC4P56524 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
HDAC4P56524 API5-211ENST00000534695 560 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.09■□□□□ 0.17
HDAC4P56524 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
HDAC4P56524 BRI3BPP1-201ENST00000594224 787 ntBASIC16.09■□□□□ 0.17
HDAC4P56524 AL049840.4-201ENST00000602422 811 ntBASIC16.09■□□□□ 0.17
HDAC4P56524 CHCHD2P3-201ENST00000603038 451 ntBASIC16.09■□□□□ 0.17
HDAC4P56524 AC004233.3-201ENST00000607794 1269 ntBASIC16.09■□□□□ 0.17
HDAC4P56524 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
HDAC4P56524 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC16.09■□□□□ 0.17
HDAC4P56524 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms