Protein–RNA interactions for Protein: P46934

NEDD4, E3 ubiquitin-protein ligase NEDD4, humanhuman

Predictions only

Length 1,319 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4P46934 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 ACKR1-201ENST00000368121 1240 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
NEDD4P46934 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 AC079776.1-201ENST00000401540 1152 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.05■□□□□ 0.48
NEDD4P46934 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC18.05■□□□□ 0.48
NEDD4P46934 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC18.05■□□□□ 0.48
NEDD4P46934 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.05■□□□□ 0.48
NEDD4P46934 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.05■□□□□ 0.48
NEDD4P46934 AC233724.13-201ENST00000598383 410 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 AC018665.1-201ENST00000622927 1362 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 ING5-213ENST00000636051 4199 ntTSL 5 BASIC18.05■□□□□ 0.48
NEDD4P46934 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 TPO-203ENST00000346956 2923 ntTSL 5 BASIC18.05■□□□□ 0.48
NEDD4P46934 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 PES1-204ENST00000402284 2144 ntTSL 5 BASIC18.05■□□□□ 0.48
NEDD4P46934 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 KRT8P35-201ENST00000483942 1338 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC18.05■□□□□ 0.48
NEDD4P46934 TCAF2P1-201ENST00000291129 2421 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
NEDD4P46934 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC18.05■□□□□ 0.48
NEDD4P46934 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
NEDD4P46934 AGAP7P-201ENST00000582299 2062 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 AGAP14-201ENST00000624701 2060 ntBASIC18.05■□□□□ 0.48
NEDD4P46934 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
NEDD4P46934 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 RBX1-201ENST00000216225 1188 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
NEDD4P46934 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
NEDD4P46934 AL645937.2-201ENST00000396808 931 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 ACTBP8-201ENST00000403258 1108 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 EIF3FP3-201ENST00000434851 1086 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC18.04■□□□□ 0.48
NEDD4P46934 CROCCP4-201ENST00000457096 498 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 AC093904.1-201ENST00000474561 455 ntTSL 3 BASIC18.04■□□□□ 0.48
NEDD4P46934 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.04■□□□□ 0.48
NEDD4P46934 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 SLC25A47P1-201ENST00000531577 414 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.04■□□□□ 0.48
NEDD4P46934 PCDHGB8P-201ENST00000502926 1973 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 AC063926.2-201ENST00000623766 1308 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
NEDD4P46934 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.04■□□□□ 0.48
NEDD4P46934 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 CICP24-201ENST00000605464 2705 ntBASIC18.04■□□□□ 0.48
NEDD4P46934 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC18.04■□□□□ 0.48
NEDD4P46934 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
NEDD4P46934 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC18.04■□□□□ 0.48
NEDD4P46934 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 LRRC57-202ENST00000397130 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC18.03■□□□□ 0.48
NEDD4P46934 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.03■□□□□ 0.48
NEDD4P46934 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 BCRP2-202ENST00000447763 634 ntBASIC18.03■□□□□ 0.48
NEDD4P46934 BCRP6-201ENST00000510112 632 ntBASIC18.03■□□□□ 0.48
NEDD4P46934 BCRP7-201ENST00000511549 544 ntBASIC18.03■□□□□ 0.48
NEDD4P46934 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.03■□□□□ 0.48
NEDD4P46934 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NEDD4P46934 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
NEDD4P46934 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
NEDD4P46934 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms