Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC13.44□□□□□ -0.26
COL8A1P27658 AC132192.2-201ENST00000596206 1147 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 BX539320.1-201ENST00000623759 877 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 AC011270.2-201ENST00000624293 2550 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC13.44□□□□□ -0.26
COL8A1P27658 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 LINC01144-201ENST00000626198 1710 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL8A1P27658 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL8A1P27658 AL138799.1-201ENST00000448213 1675 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 MIR600HG-201ENST00000449175 5984 ntBASIC13.44□□□□□ -0.26
COL8A1P27658 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC13.43□□□□□ -0.26
COL8A1P27658 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 CYP2AB1P-202ENST00000454440 1456 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 PITPNM2-202ENST00000320201 6736 ntAPPRIS P3 TSL 5 BASIC13.43□□□□□ -0.26
COL8A1P27658 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 TSPY26P-202ENST00000565928 3884 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 MRPS7-201ENST00000245539 1406 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 RNU1-114P-201ENST00000365297 166 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC13.43□□□□□ -0.26
COL8A1P27658 HLA-A-202ENST00000376806 1854 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 GEMIN7-202ENST00000391951 716 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC13.43□□□□□ -0.26
COL8A1P27658 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC13.43□□□□□ -0.26
COL8A1P27658 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 RNMTL1P1-201ENST00000454103 560 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 AMT-206ENST00000458307 1860 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 AC019193.1-201ENST00000506678 823 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 AP002490.2-201ENST00000524791 560 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC13.43□□□□□ -0.26
COL8A1P27658 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC13.43□□□□□ -0.26
COL8A1P27658 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC13.43□□□□□ -0.26
COL8A1P27658 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 AC005357.2-202ENST00000590507 1060 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 AC020922.3-201ENST00000595064 547 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 AC092171.5-201ENST00000608012 942 ntBASIC13.43□□□□□ -0.26
COL8A1P27658 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.43□□□□□ -0.26
COL8A1P27658 AC245123.1-202ENST00000612422 1719 ntTSL 5 BASIC13.43□□□□□ -0.26
COL8A1P27658 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC13.43□□□□□ -0.26
COL8A1P27658 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC13.43□□□□□ -0.26
COL8A1P27658 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 ZXDA-201ENST00000358697 4113 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
COL8A1P27658 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC13.43□□□□□ -0.26
COL8A1P27658 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL8A1P27658 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 KRT8P4-201ENST00000509735 1454 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC13.42□□□□□ -0.26
COL8A1P27658 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
COL8A1P27658 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 AC025271.4-201ENST00000621477 1726 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC13.42□□□□□ -0.26
COL8A1P27658 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 DPM3-202ENST00000368399 517 ntBASIC13.42□□□□□ -0.26
COL8A1P27658 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
COL8A1P27658 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 31.9 ms