Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC16.2■□□□□ 0.18
BDNFP23560 PFDN6-202ENST00000374607 598 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
BDNFP23560 PFDN6-203ENST00000374610 521 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
BDNFP23560 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.2■□□□□ 0.18
BDNFP23560 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.2■□□□□ 0.18
BDNFP23560 RPL7P3-201ENST00000441388 714 ntBASIC16.2■□□□□ 0.18
BDNFP23560 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.2■□□□□ 0.18
BDNFP23560 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.2■□□□□ 0.18
BDNFP23560 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
BDNFP23560 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC16.2■□□□□ 0.18
BDNFP23560 RPL28-206ENST00000558752 671 ntTSL 3 BASIC16.2■□□□□ 0.18
BDNFP23560 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC16.2■□□□□ 0.18
BDNFP23560 MIR6752-201ENST00000618442 71 ntBASIC16.2■□□□□ 0.18
BDNFP23560 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.2■□□□□ 0.18
BDNFP23560 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC16.2■□□□□ 0.18
BDNFP23560 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 AC068587.6-202ENST00000641839 5619 ntBASIC16.19■□□□□ 0.18
BDNFP23560 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 AL645937.2-201ENST00000396808 931 ntBASIC16.19■□□□□ 0.18
BDNFP23560 ACTBP8-201ENST00000403258 1108 ntBASIC16.19■□□□□ 0.18
BDNFP23560 AL139094.1-201ENST00000405549 1188 ntBASIC16.19■□□□□ 0.18
BDNFP23560 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 C2orf27AP3-201ENST00000434123 579 ntBASIC16.19■□□□□ 0.18
BDNFP23560 AC007274.1-201ENST00000439805 662 ntBASIC16.19■□□□□ 0.18
BDNFP23560 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
BDNFP23560 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.19■□□□□ 0.18
BDNFP23560 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.19■□□□□ 0.18
BDNFP23560 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 AL354718.3-201ENST00000616414 581 ntBASIC16.19■□□□□ 0.18
BDNFP23560 CR382287.1-201ENST00000623954 586 ntBASIC16.19■□□□□ 0.18
BDNFP23560 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.19■□□□□ 0.18
BDNFP23560 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
BDNFP23560 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
BDNFP23560 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 C18orf15-201ENST00000623680 2534 ntBASIC16.18■□□□□ 0.18
BDNFP23560 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC16.18■□□□□ 0.18
BDNFP23560 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.18■□□□□ 0.18
BDNFP23560 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.18■□□□□ 0.18
BDNFP23560 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.18■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms