Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
HMGA1P17096 AL136309.1-201ENST00000403917 691 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 AC004945.1-201ENST00000416738 983 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 ALG1L2-201ENST00000425059 969 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 AC004898.1-201ENST00000451057 766 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC15.8■□□□□ 0.12
HMGA1P17096 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 NIP7-208ENST00000569637 1099 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 AL139099.5-201ENST00000635274 300 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC15.8■□□□□ 0.12
HMGA1P17096 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC15.8■□□□□ 0.12
HMGA1P17096 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC15.8■□□□□ 0.12
HMGA1P17096 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
HMGA1P17096 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGA1P17096 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 RPP40-202ENST00000380051 1483 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGA1P17096 POM121L10P-201ENST00000436994 1285 ntBASIC15.79■□□□□ 0.12
HMGA1P17096 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC15.79■□□□□ 0.12
HMGA1P17096 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 AC100850.1-201ENST00000506768 649 ntBASIC15.79■□□□□ 0.12
HMGA1P17096 FBXL8-208ENST00000521920 574 ntTSL 4 BASIC15.79■□□□□ 0.12
HMGA1P17096 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC15.79■□□□□ 0.12
HMGA1P17096 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
HMGA1P17096 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 INE2-201ENST00000630399 1874 ntBASIC15.79■□□□□ 0.12
HMGA1P17096 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGA1P17096 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.79■□□□□ 0.12
HMGA1P17096 TMBIM7P-203ENST00000641617 1718 ntBASIC15.79■□□□□ 0.12
HMGA1P17096 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC15.79■□□□□ 0.12
HMGA1P17096 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC15.79■□□□□ 0.12
HMGA1P17096 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
HMGA1P17096 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HMGA1P17096 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGA1P17096 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
HMGA1P17096 ARMC8-220ENST00000489213 1714 ntTSL 5 BASIC15.78■□□□□ 0.12
HMGA1P17096 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HMGA1P17096 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC15.78■□□□□ 0.12
HMGA1P17096 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
HMGA1P17096 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.12
HMGA1P17096 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC15.78■□□□□ 0.12
HMGA1P17096 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC15.78■□□□□ 0.12
HMGA1P17096 MAX-211ENST00000555667 574 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC15.78■□□□□ 0.12
HMGA1P17096 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGA1P17096 KC6-205ENST00000599934 556 ntTSL 4 BASIC15.78■□□□□ 0.12
HMGA1P17096 KLK11-210ENST00000600362 759 ntTSL 3 BASIC15.78■□□□□ 0.12
HMGA1P17096 AP001002.3-201ENST00000623482 206 ntBASIC15.78■□□□□ 0.12
HMGA1P17096 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.78■□□□□ 0.12
HMGA1P17096 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
HMGA1P17096 TMPRSS4-214ENST00000523251 1689 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
HMGA1P17096 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
HMGA1P17096 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC15.78■□□□□ 0.12
HMGA1P17096 AC023024.2-201ENST00000623561 1993 ntBASIC15.78■□□□□ 0.12
HMGA1P17096 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms