Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC14.49□□□□□ -0.09
LDB3O75112 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.49□□□□□ -0.09
LDB3O75112 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC14.49□□□□□ -0.09
LDB3O75112 AP005018.1-201ENST00000525475 301 ntBASIC14.49□□□□□ -0.09
LDB3O75112 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC14.49□□□□□ -0.09
LDB3O75112 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.49□□□□□ -0.09
LDB3O75112 AC124283.3-201ENST00000570869 594 ntBASIC14.49□□□□□ -0.09
LDB3O75112 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC14.49□□□□□ -0.09
LDB3O75112 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
LDB3O75112 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.49□□□□□ -0.09
LDB3O75112 NANOS1-202ENST00000425699 4017 ntAPPRIS P2 BASIC14.49□□□□□ -0.09
LDB3O75112 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
LDB3O75112 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC14.49□□□□□ -0.09
LDB3O75112 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC14.49□□□□□ -0.09
LDB3O75112 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 AL138799.1-201ENST00000448213 1675 ntBASIC14.49□□□□□ -0.09
LDB3O75112 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
LDB3O75112 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC14.49□□□□□ -0.09
LDB3O75112 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 KLRG1-201ENST00000266551 1335 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 SOCS2P1-201ENST00000417727 557 ntBASIC14.48□□□□□ -0.09
LDB3O75112 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC14.48□□□□□ -0.09
LDB3O75112 COX20P2-201ENST00000452636 358 ntBASIC14.48□□□□□ -0.09
LDB3O75112 RN7SL692P-201ENST00000464677 288 ntBASIC14.48□□□□□ -0.09
LDB3O75112 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC14.48□□□□□ -0.09
LDB3O75112 TAF8-206ENST00000472818 719 ntTSL 2 BASIC14.48□□□□□ -0.09
LDB3O75112 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC14.48□□□□□ -0.09
LDB3O75112 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.48□□□□□ -0.09
LDB3O75112 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC14.48□□□□□ -0.09
LDB3O75112 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.48□□□□□ -0.09
LDB3O75112 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.48□□□□□ -0.09
LDB3O75112 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC14.48□□□□□ -0.09
LDB3O75112 AL645728.2-202ENST00000641679 227 ntBASIC14.48□□□□□ -0.09
LDB3O75112 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC14.48□□□□□ -0.09
LDB3O75112 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.48□□□□□ -0.09
LDB3O75112 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
LDB3O75112 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
LDB3O75112 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 AC126755.1-201ENST00000525846 6405 ntBASIC14.47□□□□□ -0.09
LDB3O75112 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC14.47□□□□□ -0.09
LDB3O75112 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.47□□□□□ -0.09
LDB3O75112 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
LDB3O75112 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.47□□□□□ -0.09
LDB3O75112 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 72 ms