Protein–RNA interactions for Protein: Q9Y2D8

SSX2IP, Afadin- and alpha-actinin-binding protein, humanhuman

Predictions only

Length 614 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX2IPQ9Y2D8 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.64■□□□□ 0.25
SSX2IPQ9Y2D8 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 MIR1908-201ENST00000410394 80 ntBASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SSX2IPQ9Y2D8 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 ZNF559-202ENST00000393883 5095 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 KDM2B-201ENST00000377069 5224 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 DSCR3-207ENST00000476950 937 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 KRT18P25-201ENST00000508931 1278 ntBASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 AGER-214ENST00000538695 487 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 AC015910.1-201ENST00000579400 975 ntBASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 MIR4538-201ENST00000581377 78 ntBASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 AC010328.2-201ENST00000597698 1111 ntBASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SSX2IPQ9Y2D8 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 68.3 ms