Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 HIGD1A-203ENST00000430190 741 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 POLR2H-203ENST00000430783 1159 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 ARL4AP4-201ENST00000434170 518 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 AC004540.1-204ENST00000449537 727 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 AC073413.1-201ENST00000603927 732 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 AC007881.3-201ENST00000608897 607 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 ALG1L-202ENST00000611639 701 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.6■□□□□ 0.25
LRCH3Q96II8 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
LRCH3Q96II8 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
LRCH3Q96II8 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 REXO1L1P-202ENST00000608646 1974 ntBASIC16.59■□□□□ 0.25
LRCH3Q96II8 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 AC006449.5-201ENST00000610658 2098 ntBASIC16.59■□□□□ 0.25
LRCH3Q96II8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 OR1J1-201ENST00000259357 969 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 RGS5-214ENST00000429865 754 ntTSL 3 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 DARS-AS1-204ENST00000444406 442 ntTSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 PFN2-206ENST00000461930 606 ntTSL 4 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 AC026410.1-201ENST00000507366 1101 ntBASIC16.59■□□□□ 0.25
LRCH3Q96II8 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 AC135983.1-201ENST00000562108 1097 ntTSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 AL031713.1-201ENST00000564813 661 ntBASIC16.59■□□□□ 0.25
LRCH3Q96II8 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 FTLP5-201ENST00000586853 534 ntBASIC16.59■□□□□ 0.25
LRCH3Q96II8 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 IRF3-215ENST00000596822 823 ntTSL 3 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 RAMP3-201ENST00000242249 1323 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
LRCH3Q96II8 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC16.59■□□□□ 0.25
LRCH3Q96II8 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.58■□□□□ 0.25
LRCH3Q96II8 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 CLPTM1-203ENST00000546079 2342 ntTSL 2 BASIC16.58■□□□□ 0.25
LRCH3Q96II8 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
LRCH3Q96II8 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 POU5F1P6-201ENST00000466990 990 ntBASIC16.58■□□□□ 0.24
LRCH3Q96II8 DERL3-208ENST00000476077 969 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
LRCH3Q96II8 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
LRCH3Q96II8 AC090857.1-201ENST00000527400 390 ntBASIC16.58■□□□□ 0.24
LRCH3Q96II8 AC024475.1-201ENST00000528480 605 ntTSL 5 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 HKR1-225ENST00000592168 566 ntTSL 4 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 MIR6858-201ENST00000620733 67 ntBASIC16.58■□□□□ 0.24
LRCH3Q96II8 MME-218ENST00000625667 363 ntTSL 5 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 CNOT7-213ENST00000628418 432 ntTSL 5 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
LRCH3Q96II8 FHL2-206ENST00000408995 1367 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
LRCH3Q96II8 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms