Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 PTPA-220ENST00000436883 532 ntTSL 4 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC026410.3-201ENST00000514280 936 ntBASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 ENPP7P5-201ENST00000541031 1031 ntBASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC012645.4-201ENST00000610691 1061 ntBASIC13.88□□□□□ -0.19
CPNE4Q96A23 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 WFDC1-204ENST00000613603 549 ntBASIC13.88□□□□□ -0.19
CPNE4Q96A23 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 DRD5P1-201ENST00000456605 1438 ntBASIC13.88□□□□□ -0.19
CPNE4Q96A23 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 MYZAP-202ENST00000380565 2181 ntAPPRIS ALT2 TSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC13.88□□□□□ -0.19
CPNE4Q96A23 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC13.88□□□□□ -0.19
CPNE4Q96A23 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 HNRNPA1P48-201ENST00000562726 1377 ntBASIC13.87□□□□□ -0.19
CPNE4Q96A23 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC107373.2-201ENST00000607735 490 ntBASIC13.87□□□□□ -0.19
CPNE4Q96A23 AL033527.5-201ENST00000641382 801 ntBASIC13.87□□□□□ -0.19
CPNE4Q96A23 KRT8P22-201ENST00000562317 1415 ntBASIC13.87□□□□□ -0.19
CPNE4Q96A23 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TRIM71-201ENST00000383763 8685 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 KCNH3-201ENST00000257981 3867 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 AC009090.5-201ENST00000624886 2285 ntBASIC13.87□□□□□ -0.19
CPNE4Q96A23 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC13.87□□□□□ -0.19
CPNE4Q96A23 MROH1-207ENST00000528919 5234 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
CPNE4Q96A23 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
CPNE4Q96A23 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
CPNE4Q96A23 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms