Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AC127070.2-201ENST00000424075 555 ntTSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 FAM8A4P-201ENST00000435433 1213 ntBASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AC005077.2-201ENST00000449786 690 ntBASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AL450003.2-201ENST00000450445 428 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 APOA2-204ENST00000464492 530 ntTSL 3 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AC025048.1-201ENST00000592317 542 ntTSL 4 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AC243967.2-201ENST00000601409 567 ntTSL 4 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 PRSS30P-206ENST00000641773 873 ntBASIC15.41■□□□□ 0.06
HMGB4Q8WW32 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 RCOR1-201ENST00000262241 5754 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 LTF-203ENST00000426532 2494 ntTSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 PCMTD2-207ENST00000609372 1321 ntTSL 4 BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
HMGB4Q8WW32 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 AC018735.1-201ENST00000437208 1502 ntBASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 MIR663B-201ENST00000408361 115 ntBASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 AL157373.2-201ENST00000437559 784 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ANAPC15-208ENST00000538393 867 ntAPPRIS P3 TSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ZNFX1-AS1_1.1-201ENST00000615787 198 ntBASIC15.4■□□□□ 0.06
HMGB4Q8WW32 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 DRC3-201ENST00000313838 2064 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 MYB-242ENST00000618728 3545 ntTSL 5 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HMGB4Q8WW32 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.39■□□□□ 0.06
HMGB4Q8WW32 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 AL162231.1-201ENST00000421828 1525 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
HMGB4Q8WW32 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.39■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms