Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 RPS3-201ENST00000278572 907 ntTSL 3 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AP001258.2-201ENST00000529891 490 ntBASIC14.95□□□□□ -0.02
LMX1AQ8TE12 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 AL118508.1-201ENST00000613502 2345 ntBASIC14.95□□□□□ -0.02
LMX1AQ8TE12 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
LMX1AQ8TE12 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 FBXO8-202ENST00000503293 1546 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AC018685.1-201ENST00000457813 368 ntTSL 3 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 KRT8P13-201ENST00000463294 1010 ntBASIC14.94□□□□□ -0.02
LMX1AQ8TE12 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AC022616.1-201ENST00000518688 554 ntBASIC14.94□□□□□ -0.02
LMX1AQ8TE12 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 CCL5-202ENST00000605140 1244 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 AL606495.2-201ENST00000605867 535 ntBASIC14.94□□□□□ -0.02
LMX1AQ8TE12 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
LMX1AQ8TE12 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 AC015818.8-201ENST00000587907 1519 ntBASIC14.93□□□□□ -0.02
LMX1AQ8TE12 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
LMX1AQ8TE12 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.93□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms