Protein–RNA interactions for Protein: Q2M329

CCDC96, Coiled-coil domain-containing protein 96, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC96Q2M329 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CCDC96Q2M329 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.97■□□□□ 0.47
CCDC96Q2M329 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 NORAD-201ENST00000565493 5339 ntBASIC17.96■□□□□ 0.47
CCDC96Q2M329 ANKRD19P-201ENST00000338192 862 ntBASIC17.96■□□□□ 0.47
CCDC96Q2M329 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AC022137.2-201ENST00000503482 481 ntBASIC17.96■□□□□ 0.47
CCDC96Q2M329 AC104989.1-201ENST00000519711 778 ntBASIC17.96■□□□□ 0.47
CCDC96Q2M329 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 AC133552.6-201ENST00000613406 534 ntBASIC17.96■□□□□ 0.47
CCDC96Q2M329 RPS24-214ENST00000613865 538 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.96■□□□□ 0.47
CCDC96Q2M329 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
CCDC96Q2M329 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.96■□□□□ 0.46
CCDC96Q2M329 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC17.96■□□□□ 0.46
CCDC96Q2M329 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.46
CCDC96Q2M329 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 FAM172A-206ENST00000509163 1369 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 KRT223P-202ENST00000449164 1292 ntBASIC17.95■□□□□ 0.46
CCDC96Q2M329 CTBP2P5-201ENST00000454986 1264 ntBASIC17.95■□□□□ 0.46
CCDC96Q2M329 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 MIR4259-201ENST00000584466 101 ntBASIC17.95■□□□□ 0.46
CCDC96Q2M329 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 MIR6752-201ENST00000618442 71 ntBASIC17.95■□□□□ 0.46
CCDC96Q2M329 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC17.95■□□□□ 0.46
CCDC96Q2M329 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
CCDC96Q2M329 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC96Q2M329 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC96Q2M329 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC96Q2M329 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC96Q2M329 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
CCDC96Q2M329 AC105250.1-201ENST00000509378 2057 ntBASIC17.94■□□□□ 0.46
CCDC96Q2M329 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
CCDC96Q2M329 BANP-201ENST00000286122 2368 ntTSL 5 BASIC17.94■□□□□ 0.46
CCDC96Q2M329 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC17.94■□□□□ 0.46
CCDC96Q2M329 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
CCDC96Q2M329 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 52.8 ms