Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 SPDYE14P-201ENST00000442619 822 ntBASIC15.2■□□□□ 0.02
PKNOX1P55347 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 NXF1-213ENST00000532297 2795 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 ABCG1-201ENST00000343687 3037 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 WASH3P-207ENST00000560956 1394 ntBASIC15.2■□□□□ 0.02
PKNOX1P55347 FO538757.1-201ENST00000623083 1397 ntBASIC15.2■□□□□ 0.02
PKNOX1P55347 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
PKNOX1P55347 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
PKNOX1P55347 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
PKNOX1P55347 MBOAT2-201ENST00000305997 7751 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
PKNOX1P55347 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 RAF1-201ENST00000251849 3300 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 GCK-204ENST00000403799 2729 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 SOCS2-205ENST00000548537 3733 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 AC140479.7-201ENST00000636301 2332 ntBASIC15.19■□□□□ 0.02
PKNOX1P55347 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.19■□□□□ 0.02
PKNOX1P55347 TARDBPP1-201ENST00000442013 1203 ntBASIC15.19■□□□□ 0.02
PKNOX1P55347 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.19■□□□□ 0.02
PKNOX1P55347 AC026150.2-201ENST00000564693 1156 ntBASIC15.19■□□□□ 0.02
PKNOX1P55347 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 AL671883.3-201ENST00000603274 991 ntBASIC15.19■□□□□ 0.02
PKNOX1P55347 AC004835.2-201ENST00000603762 682 ntBASIC15.19■□□□□ 0.02
PKNOX1P55347 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC15.19■□□□□ 0.02
PKNOX1P55347 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 CNPY1-203ENST00000636372 2259 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
PKNOX1P55347 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
PKNOX1P55347 AC015656.1-201ENST00000624209 3578 ntBASIC15.19■□□□□ 0.02
PKNOX1P55347 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 BTN1A1-201ENST00000244513 2895 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.18■□□□□ 0.02
PKNOX1P55347 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
PKNOX1P55347 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms