Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
VCPP55072 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
VCPP55072 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
VCPP55072 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 AC092127.1-201ENST00000567093 3455 ntBASIC16.54■□□□□ 0.24
VCPP55072 PGR-210ENST00000619228 3038 ntTSL 5 BASIC16.54■□□□□ 0.24
VCPP55072 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.54■□□□□ 0.24
VCPP55072 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.54■□□□□ 0.24
VCPP55072 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 ITPA-201ENST00000380113 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 KRT8P13-201ENST00000463294 1010 ntBASIC16.54■□□□□ 0.24
VCPP55072 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC16.54■□□□□ 0.24
VCPP55072 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC16.54■□□□□ 0.24
VCPP55072 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 MIR5189-201ENST00000577370 114 ntBASIC16.54■□□□□ 0.24
VCPP55072 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 SPIB-207ENST00000597855 564 ntTSL 4 BASIC16.54■□□□□ 0.24
VCPP55072 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC16.54■□□□□ 0.24
VCPP55072 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 AATBC-203ENST00000448247 1889 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.54■□□□□ 0.24
VCPP55072 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC16.54■□□□□ 0.24
VCPP55072 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
VCPP55072 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
VCPP55072 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
VCPP55072 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 API5-202ENST00000420461 2009 ntTSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 BNIP3P1-202ENST00000550043 1585 ntBASIC16.53■□□□□ 0.24
VCPP55072 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.53■□□□□ 0.24
VCPP55072 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 AZGP1P1-201ENST00000411909 902 ntBASIC16.53■□□□□ 0.24
VCPP55072 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC16.53■□□□□ 0.24
VCPP55072 RPL7P3-201ENST00000441388 714 ntBASIC16.53■□□□□ 0.24
VCPP55072 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC16.53■□□□□ 0.24
VCPP55072 PTK7-212ENST00000476760 902 ntTSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 LAMA5-AS1-203ENST00000478167 690 ntTSL 3 BASIC16.53■□□□□ 0.24
VCPP55072 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC16.53■□□□□ 0.24
VCPP55072 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 AC092337.1-201ENST00000568699 1129 ntBASIC16.53■□□□□ 0.24
VCPP55072 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.53■□□□□ 0.24
VCPP55072 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
VCPP55072 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 AL022328.1-201ENST00000610050 478 ntBASIC16.53■□□□□ 0.24
VCPP55072 AC009542.2-202ENST00000619004 1067 ntBASIC16.53■□□□□ 0.24
VCPP55072 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC16.53■□□□□ 0.24
VCPP55072 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
VCPP55072 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
VCPP55072 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC16.52■□□□□ 0.24
VCPP55072 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC16.52■□□□□ 0.24
VCPP55072 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms