Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC15.02■□□□□ -0
HNF4AP41235 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.02■□□□□ -0
HNF4AP41235 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.02■□□□□ -0
HNF4AP41235 MRPS18AP1-201ENST00000414458 589 ntBASIC15.02■□□□□ -0
HNF4AP41235 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.02■□□□□ -0
HNF4AP41235 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 SPDYE18-201ENST00000510091 1050 ntBASIC15.02■□□□□ -0
HNF4AP41235 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.02■□□□□ -0
HNF4AP41235 AC004840.1-201ENST00000636359 365 ntBASIC15.02■□□□□ -0
HNF4AP41235 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC15.02□□□□□ -0.01
HNF4AP41235 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.02□□□□□ -0.01
HNF4AP41235 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 FAM160B1-203ENST00000369250 2870 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 MECR-202ENST00000373791 2416 ntTSL 2 BASIC15.02□□□□□ -0.01
HNF4AP41235 RBBP8-201ENST00000327155 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC15.02□□□□□ -0.01
HNF4AP41235 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.01□□□□□ -0.01
HNF4AP41235 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC15.01□□□□□ -0.01
HNF4AP41235 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.01□□□□□ -0.01
HNF4AP41235 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.01□□□□□ -0.01
HNF4AP41235 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.01□□□□□ -0.01
HNF4AP41235 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 TIMM17BP1-201ENST00000545713 516 ntBASIC15.01□□□□□ -0.01
HNF4AP41235 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.01□□□□□ -0.01
HNF4AP41235 AC011467.4-201ENST00000594891 528 ntBASIC15.01□□□□□ -0.01
HNF4AP41235 5S_rRNA.22-201ENST00000614916 106 ntBASIC15.01□□□□□ -0.01
HNF4AP41235 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC15.01□□□□□ -0.01
HNF4AP41235 AL645728.2-202ENST00000641679 227 ntBASIC15.01□□□□□ -0.01
HNF4AP41235 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 AL009178.2-201ENST00000597278 2719 ntBASIC15.01□□□□□ -0.01
HNF4AP41235 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 FBXO46-201ENST00000317683 3001 ntAPPRIS P1 TSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.01□□□□□ -0.01
HNF4AP41235 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.01□□□□□ -0.01
HNF4AP41235 BTBD7P1-201ENST00000447253 1453 ntBASIC15.01□□□□□ -0.01
HNF4AP41235 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC15.01□□□□□ -0.01
HNF4AP41235 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 MROH4P-201ENST00000431302 1578 ntBASIC15□□□□□ -0.01
HNF4AP41235 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 RAC2-204ENST00000406508 893 ntTSL 5 BASIC15□□□□□ -0.01
HNF4AP41235 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15□□□□□ -0.01
HNF4AP41235 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC15□□□□□ -0.01
HNF4AP41235 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15□□□□□ -0.01
HNF4AP41235 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC15□□□□□ -0.01
HNF4AP41235 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15□□□□□ -0.01
HNF4AP41235 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15□□□□□ -0.01
HNF4AP41235 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC15□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms