Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC112504.1-201ENST00000623415 1841 ntBASIC18.13■□□□□ 0.49
BRCA1P38398 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 AL158166.1-201ENST00000433110 371 ntTSL 2 BASIC18.13■□□□□ 0.49
BRCA1P38398 ZSCAN2-208ENST00000485222 910 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 ZNF879-202ENST00000519896 543 ntTSL 4 BASIC18.13■□□□□ 0.49
BRCA1P38398 POLD4-206ENST00000530584 899 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 ZSCAN2-210ENST00000538076 1109 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 RN7SL665P-201ENST00000578793 300 ntBASIC18.13■□□□□ 0.49
BRCA1P38398 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC18.13■□□□□ 0.49
BRCA1P38398 AC027601.3-201ENST00000622907 509 ntBASIC18.13■□□□□ 0.49
BRCA1P38398 AL451007.2-201ENST00000632004 563 ntBASIC18.13■□□□□ 0.49
BRCA1P38398 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 MINDY4B-201ENST00000465419 1383 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
BRCA1P38398 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.13■□□□□ 0.49
BRCA1P38398 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC18.13■□□□□ 0.49
BRCA1P38398 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC18.13■□□□□ 0.49
BRCA1P38398 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 U2AF1L4-201ENST00000292879 729 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 SURF4-203ENST00000371991 715 ntTSL 3 BASIC18.12■□□□□ 0.49
BRCA1P38398 PTTG1IP-202ENST00000397886 755 ntTSL 4 BASIC18.12■□□□□ 0.49
BRCA1P38398 FAM92A-202ENST00000423990 914 ntTSL 5 BASIC18.12■□□□□ 0.49
BRCA1P38398 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC18.12■□□□□ 0.49
BRCA1P38398 AL355537.2-201ENST00000453367 375 ntTSL 2 BASIC18.12■□□□□ 0.49
BRCA1P38398 AC037486.1-201ENST00000523792 790 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC18.12■□□□□ 0.49
BRCA1P38398 SIGLEC22P-202ENST00000602065 544 ntTSL 4 BASIC18.12■□□□□ 0.49
BRCA1P38398 AC242426.4-201ENST00000606856 573 ntTSL 5 BASIC18.12■□□□□ 0.49
BRCA1P38398 AP000322.3-201ENST00000608665 388 ntBASIC18.12■□□□□ 0.49
BRCA1P38398 AC010976.2-201ENST00000609697 852 ntBASIC18.12■□□□□ 0.49
BRCA1P38398 ADH5-213ENST00000626055 1299 ntTSL 5 BASIC18.12■□□□□ 0.49
BRCA1P38398 LINC00969-294ENST00000627609 992 ntTSL 5 BASIC18.12■□□□□ 0.49
BRCA1P38398 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC18.12■□□□□ 0.49
BRCA1P38398 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.12■□□□□ 0.49
BRCA1P38398 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 RBM4B-201ENST00000310046 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC18.12■□□□□ 0.49
BRCA1P38398 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
BRCA1P38398 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC18.12■□□□□ 0.49
BRCA1P38398 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 C7orf61-201ENST00000332375 1004 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
BRCA1P38398 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 AC108734.2-201ENST00000420887 1069 ntBASIC18.12■□□□□ 0.49
BRCA1P38398 ZNF268-210ENST00000541211 781 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
BRCA1P38398 AC009163.3-201ENST00000563554 852 ntTSL 3 BASIC18.12■□□□□ 0.49
BRCA1P38398 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
BRCA1P38398 CLIC5-208ENST00000544153 2051 ntTSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC18.11■□□□□ 0.49
BRCA1P38398 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 CRYBB3-201ENST00000215855 867 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 KRTAP19-5-201ENST00000334151 461 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
BRCA1P38398 PRKAR2A-AS1-203ENST00000431705 592 ntTSL 4 BASIC18.11■□□□□ 0.49
BRCA1P38398 ERP29P1-201ENST00000442902 706 ntBASIC18.11■□□□□ 0.49
BRCA1P38398 RHEB-207ENST00000496004 744 ntTSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 AC022858.1-202ENST00000521084 393 ntTSL 3 BASIC18.11■□□□□ 0.49
BRCA1P38398 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC18.11■□□□□ 0.49
BRCA1P38398 USB1-205ENST00000561743 1135 ntTSL 3 BASIC18.11■□□□□ 0.49
BRCA1P38398 AC020659.1-202ENST00000564432 531 ntTSL 5 BASIC18.11■□□□□ 0.49
BRCA1P38398 AC055811.3-201ENST00000584952 686 ntBASIC18.11■□□□□ 0.49
BRCA1P38398 PSMD5-208ENST00000625444 219 ntTSL 5 BASIC18.11■□□□□ 0.49
BRCA1P38398 AL359258.3-201ENST00000622910 2331 ntBASIC18.11■□□□□ 0.49
BRCA1P38398 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
BRCA1P38398 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
BRCA1P38398 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC18.11■□□□□ 0.49
BRCA1P38398 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
BRCA1P38398 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 TOMM22-201ENST00000216034 2040 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
BRCA1P38398 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC18.1■□□□□ 0.49
BRCA1P38398 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC18.1■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms