Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC134915.1-201ENST00000426461 574 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 USP32P1-208ENST00000506594 1164 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 PTP4A1P2-201ENST00000546033 454 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 FAM192A-212ENST00000566077 1066 ntTSL 3 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 BRI3BPP1-201ENST00000594224 787 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 LINC01115-203ENST00000606068 577 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 AC005089.1-201ENST00000619486 2241 ntBASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TMX2-CTNND1H3BSU7 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC15.21■□□□□ 0.02
TMX2-CTNND1H3BSU7 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.21■□□□□ 0.02
TMX2-CTNND1H3BSU7 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
TMX2-CTNND1H3BSU7 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC15.21■□□□□ 0.02
TMX2-CTNND1H3BSU7 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.02
TMX2-CTNND1H3BSU7 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 AZGP1P1-201ENST00000411909 902 ntBASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SOCS2P1-201ENST00000417727 557 ntBASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 TDH-203ENST00000531764 1110 ntBASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 CACNA2D4-208ENST00000538027 952 ntTSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 NEIL2-201ENST00000284503 2671 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 TSEN2-205ENST00000444864 2697 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 KCNC1-202ENST00000379472 7965 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SP100-205ENST00000409824 1802 ntTSL 5 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
TMX2-CTNND1H3BSU7 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 MEGF10-202ENST00000418761 2238 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.19■□□□□ 0.02
TMX2-CTNND1H3BSU7 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC15.19■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms