Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 AC040169.1-201ENST00000565382 521 ntBASIC15.23■□□□□ 0.03
MKS1Q9NXB0 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 AC022145.2-201ENST00000598203 171 ntBASIC15.23■□□□□ 0.03
MKS1Q9NXB0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 MAGED4B-202ENST00000360134 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 TRIM46-210ENST00000545012 2979 ntTSL 2 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 P4HA1-205ENST00000440381 2790 ntTSL 3 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 AQP6-204ENST00000615425 2245 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 KAT5-216ENST00000534650 1875 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC15.23■□□□□ 0.03
MKS1Q9NXB0 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 TOMM22P5-201ENST00000416399 439 ntBASIC15.22■□□□□ 0.03
MKS1Q9NXB0 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 TPM4P1-201ENST00000436100 807 ntBASIC15.22■□□□□ 0.03
MKS1Q9NXB0 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 AL079307.3-201ENST00000556114 283 ntBASIC15.22■□□□□ 0.03
MKS1Q9NXB0 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 MIR6069-201ENST00000620069 79 ntBASIC15.22■□□□□ 0.03
MKS1Q9NXB0 GPR39-203ENST00000622084 900 ntTSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 LTBP3-221ENST00000532932 3327 ntTSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 CARHSP1-220ENST00000619881 2849 ntAPPRIS P1 TSL 3 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 HTR7-202ENST00000336152 3126 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 AL121723.1-201ENST00000445194 1519 ntBASIC15.22■□□□□ 0.03
MKS1Q9NXB0 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
MKS1Q9NXB0 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 SLC6A20-204ENST00000456124 2662 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 PRKN-204ENST00000366896 2514 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 TATDN3-202ENST00000366974 2389 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 GPR132-203ENST00000539291 2779 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 PLTP-201ENST00000354050 1731 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 IMP4-203ENST00000409935 958 ntTSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 KRT18P32-201ENST00000424695 1287 ntBASIC15.21■□□□□ 0.03
MKS1Q9NXB0 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 FAM58DP-201ENST00000428076 619 ntBASIC15.21■□□□□ 0.03
MKS1Q9NXB0 GPS2P2-201ENST00000430745 888 ntBASIC15.21■□□□□ 0.03
MKS1Q9NXB0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC15.21■□□□□ 0.03
MKS1Q9NXB0 SAMD11P1-201ENST00000571429 661 ntBASIC15.21■□□□□ 0.03
MKS1Q9NXB0 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms