Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 AC007952.4-201ENST00000573866 637 ntBASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC004231.3-201ENST00000579136 258 ntTSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC005154.1-232ENST00000582549 556 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC003006.1-202ENST00000594684 612 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 FXYD3-204ENST00000603181 758 ntAPPRIS P1 TSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 RPF1-201ENST00000370654 1385 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 PHF5A-201ENST00000216252 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 PDLIM5-203ENST00000359265 1189 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 EIF4E2-205ENST00000409394 604 ntTSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AL356417.1-201ENST00000421161 845 ntTSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC15.23■□□□□ 0.03
TTC28Q96AY4 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.23■□□□□ 0.03
TTC28Q96AY4 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 AL138781.2-201ENST00000617896 1843 ntBASIC15.22■□□□□ 0.03
TTC28Q96AY4 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 CALR3-201ENST00000269881 1292 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 HNRNPABP1-201ENST00000406003 734 ntBASIC15.22■□□□□ 0.03
TTC28Q96AY4 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC092570.1-201ENST00000414446 469 ntBASIC15.22■□□□□ 0.03
TTC28Q96AY4 CASP3-205ENST00000517513 964 ntTSL 5 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 NR4A1-209ENST00000548232 1101 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 FOXN3-AS2-201ENST00000554071 1262 ntBASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC005993.1-201ENST00000555581 397 ntTSL 5 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC008825.2-201ENST00000603374 718 ntBASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC079331.1-201ENST00000623200 1200 ntBASIC15.22■□□□□ 0.03
TTC28Q96AY4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 PAIP2-201ENST00000265192 1459 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 DHRS7-209ENST00000557185 1322 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 TEX33-201ENST00000381821 978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 IGKV1OR2-108-201ENST00000453673 353 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 DUXAP9-201ENST00000547220 665 ntTSL 3 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC005746.2-201ENST00000585765 470 ntTSL 5 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 AC008906.2-201ENST00000606656 474 ntTSL 2 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 BLACE-202ENST00000616210 540 ntAPPRIS P1 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC15.22■□□□□ 0.03
TTC28Q96AY4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 SGCE-204ENST00000428696 1409 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
TTC28Q96AY4 ATP5A1-201ENST00000282050 1945 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 S100A13-203ENST00000392623 579 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 AC034228.2-201ENST00000432558 459 ntTSL 3 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 AC006372.2-201ENST00000433660 292 ntTSL 3 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 NMRK2-202ENST00000593949 869 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 NMRK2-204ENST00000599576 691 ntTSL 3 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 LYRM1-203ENST00000412082 1399 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
TTC28Q96AY4 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
TTC28Q96AY4 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms