Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AC104596.2-201ENST00000512793 793 ntBASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 PAM16-204ENST00000571941 674 ntTSL 3 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 FXYD6-216ENST00000584230 566 ntAPPRIS ALT1 TSL 3 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 CTBP2P3-201ENST00000585629 1255 ntBASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 MIR8072-201ENST00000614241 80 ntBASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 CLPTM1-202ENST00000541297 2732 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 NDRG2-226ENST00000554104 2146 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 NR4A1-204ENST00000394825 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SHROOM3Q8TF72 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC098614.1-201ENST00000368528 745 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC008735.3-201ENST00000596646 500 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 PKN2-201ENST00000316005 2632 ntTSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 HLA-K-203ENST00000430151 1046 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AC007389.4-201ENST00000454674 793 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 INE1-201ENST00000456273 945 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 TMEM261P1-201ENST00000604899 340 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AL162274.1-201ENST00000617191 1098 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 GPR182-203ENST00000622922 591 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 CUX1-213ENST00000549414 4452 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
SHROOM3Q8TF72 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 AL133338.1-201ENST00000565695 1517 ntBASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC15.66■□□□□ 0.1
SHROOM3Q8TF72 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms