Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AL645937.2-201ENST00000396808 931 ntBASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 MIR5196-201ENST00000578146 115 ntBASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 MIR3677-201ENST00000578964 60 ntBASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 RPS15-202ENST00000585665 467 ntTSL 3 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AC009955.4-201ENST00000597192 544 ntBASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 AC080080.1-201ENST00000625121 2420 ntBASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
SMC1BQ8NDV3 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 ALKBH2-201ENST00000343075 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 AC026320.2-201ENST00000434379 478 ntBASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 EIF3FP3-201ENST00000434851 1086 ntBASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 CHCHD2P9-201ENST00000461726 456 ntBASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 ARPP19-206ENST00000564163 718 ntTSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 MIR4783-201ENST00000580343 82 ntBASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 FTLP5-201ENST00000586853 534 ntBASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
SMC1BQ8NDV3 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 TMEM177-202ENST00000401466 1346 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 KLK11-203ENST00000391804 930 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 LSM5-207ENST00000410044 687 ntTSL 3 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 FAM58BP-201ENST00000439056 645 ntBASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 SMIM6-201ENST00000556126 866 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AC145207.8-201ENST00000580897 563 ntTSL 4 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AL109837.1-201ENST00000603272 613 ntBASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AC073592.2-201ENST00000623062 780 ntBASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AC073911.3-201ENST00000624401 631 ntBASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 AC084018.2-201ENST00000613093 2607 ntBASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SMC1BQ8NDV3 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
SMC1BQ8NDV3 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms