Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL118558.3-201ENST00000607414 1079 ntBASIC15.71■□□□□ 0.11
USP39Q53GS9 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
USP39Q53GS9 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
USP39Q53GS9 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC15.71■□□□□ 0.11
USP39Q53GS9 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC15.71■□□□□ 0.11
USP39Q53GS9 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC15.71■□□□□ 0.11
USP39Q53GS9 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
USP39Q53GS9 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC15.71■□□□□ 0.11
USP39Q53GS9 MAGI1-201ENST00000330909 7415 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.71■□□□□ 0.1
USP39Q53GS9 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.71■□□□□ 0.1
USP39Q53GS9 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC15.71■□□□□ 0.1
USP39Q53GS9 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.71■□□□□ 0.1
USP39Q53GS9 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.71■□□□□ 0.1
USP39Q53GS9 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.1
USP39Q53GS9 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 PPP2R1B-203ENST00000393055 1525 ntTSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.7■□□□□ 0.1
USP39Q53GS9 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 AC006033.1-201ENST00000440505 426 ntBASIC15.7■□□□□ 0.1
USP39Q53GS9 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 AP001258.2-201ENST00000529891 490 ntBASIC15.7■□□□□ 0.1
USP39Q53GS9 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC15.7■□□□□ 0.1
USP39Q53GS9 IFT20-206ENST00000578122 834 ntTSL 2 BASIC15.7■□□□□ 0.1
USP39Q53GS9 IFT20-208ENST00000578985 831 ntTSL 3 BASIC15.7■□□□□ 0.1
USP39Q53GS9 AL022328.3-201ENST00000607943 679 ntBASIC15.7■□□□□ 0.1
USP39Q53GS9 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.7■□□□□ 0.1
USP39Q53GS9 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.7■□□□□ 0.1
USP39Q53GS9 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC15.7■□□□□ 0.1
USP39Q53GS9 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
USP39Q53GS9 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
USP39Q53GS9 HAND2-AS1-202ENST00000502896 5278 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 AL121723.1-201ENST00000445194 1519 ntBASIC15.69■□□□□ 0.1
USP39Q53GS9 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.69■□□□□ 0.1
USP39Q53GS9 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 AGER-203ENST00000375065 665 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 TEX30-203ENST00000376022 828 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.69■□□□□ 0.1
USP39Q53GS9 CNN2P8-201ENST00000421872 913 ntBASIC15.69■□□□□ 0.1
USP39Q53GS9 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
USP39Q53GS9 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC15.69■□□□□ 0.1
USP39Q53GS9 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC15.69■□□□□ 0.1
USP39Q53GS9 AC026410.3-201ENST00000514280 936 ntBASIC15.69■□□□□ 0.1
USP39Q53GS9 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 AL021546.1-201ENST00000551806 552 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
USP39Q53GS9 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
USP39Q53GS9 KSR1-207ENST00000578981 748 ntTSL 4 BASIC15.69■□□□□ 0.1
USP39Q53GS9 GPX4-206ENST00000588919 803 ntTSL 2 BASIC15.69■□□□□ 0.1
USP39Q53GS9 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC15.69■□□□□ 0.1
USP39Q53GS9 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC15.69■□□□□ 0.1
USP39Q53GS9 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC15.69■□□□□ 0.1
USP39Q53GS9 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.69■□□□□ 0.1
USP39Q53GS9 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 55.7 ms