Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 DTNB-228ENST00000496972 2328 ntTSL 2 BASIC12.93□□□□□ -0.34
PDLIM3Q53GG5 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
PDLIM3Q53GG5 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
PDLIM3Q53GG5 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AC090616.6-203ENST00000579186 1945 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 RASD2-201ENST00000216127 3412 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 ST6GAL1-201ENST00000169298 4645 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AC092506.1-202ENST00000401022 528 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SPDYE7P-202ENST00000420373 878 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 FAM58DP-201ENST00000428076 619 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AL671277.1-201ENST00000429656 993 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 RBPMS2P1-201ENST00000437762 623 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 PACS1-203ENST00000524815 628 ntTSL 4 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 FHL2-212ENST00000607522 759 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AL162274.1-201ENST00000617191 1098 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 MAP4K1-210ENST00000591517 2700 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 PPP6R1-203ENST00000587283 2953 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 AC073439.1-201ENST00000624121 1774 ntBASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC12.92□□□□□ -0.34
PDLIM3Q53GG5 SLC16A9-202ENST00000395348 4178 ntAPPRIS P1 TSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 WASH6P-202ENST00000359512 1437 ntBASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 CCDC180-210ENST00000529487 5242 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 CEP19-201ENST00000399942 1172 ntAPPRIS ALT2 TSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 GS1-24F4.2-201ENST00000500823 1110 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 LINC00824-206ENST00000523173 920 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 ARL16-202ENST00000570561 768 ntTSL 2 BASIC12.91□□□□□ -0.34
PDLIM3Q53GG5 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms