Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC13.27□□□□□ -0.29
ABCA4P78363 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
ABCA4P78363 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 PLXDC2-202ENST00000377242 2822 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC13.27□□□□□ -0.29
ABCA4P78363 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
ABCA4P78363 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
ABCA4P78363 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC13.27□□□□□ -0.29
ABCA4P78363 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC13.27□□□□□ -0.29
ABCA4P78363 AC092978.1-202ENST00000637590 1327 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 MIR648-201ENST00000385046 94 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 FAM197Y7-201ENST00000432892 766 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC13.27□□□□□ -0.29
ABCA4P78363 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC13.27□□□□□ -0.29
ABCA4P78363 AP001582.1-201ENST00000525856 295 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC13.27□□□□□ -0.29
ABCA4P78363 MAP1LC3B2-202ENST00000556529 660 ntAPPRIS P1 TSL 3 BASIC13.27□□□□□ -0.29
ABCA4P78363 MIR3907-201ENST00000579424 151 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 UBL5-208ENST00000593087 320 ntTSL 3 BASIC13.27□□□□□ -0.29
ABCA4P78363 AC020914.3-201ENST00000594712 304 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 AC132938.4-201ENST00000623835 848 ntBASIC13.27□□□□□ -0.29
ABCA4P78363 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 NEO1-201ENST00000261908 7088 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 CKMT2-201ENST00000254035 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
ABCA4P78363 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
ABCA4P78363 AC009090.5-201ENST00000624886 2285 ntBASIC13.26□□□□□ -0.29
ABCA4P78363 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
ABCA4P78363 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
ABCA4P78363 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
ABCA4P78363 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC13.26□□□□□ -0.29
ABCA4P78363 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC13.26□□□□□ -0.29
ABCA4P78363 AC005730.2-201ENST00000564549 1184 ntBASIC13.26□□□□□ -0.29
ABCA4P78363 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC13.26□□□□□ -0.29
ABCA4P78363 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC13.26□□□□□ -0.29
ABCA4P78363 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
ABCA4P78363 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
ABCA4P78363 ZNF628-203ENST00000598519 3847 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
ABCA4P78363 AHCYP2-201ENST00000430630 1300 ntBASIC13.26□□□□□ -0.29
ABCA4P78363 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
ABCA4P78363 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC13.25□□□□□ -0.29
ABCA4P78363 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 KLF2P2-201ENST00000416807 1039 ntBASIC13.25□□□□□ -0.29
ABCA4P78363 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.25□□□□□ -0.29
ABCA4P78363 AL451065.1-201ENST00000428958 238 ntTSL 5 BASIC13.25□□□□□ -0.29
ABCA4P78363 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
ABCA4P78363 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC13.25□□□□□ -0.29
ABCA4P78363 RPSAP36-202ENST00000494591 1261 ntBASIC13.25□□□□□ -0.29
ABCA4P78363 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 53.2 ms