Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RN7SKP109-201ENST00000410592 316 ntBASIC18.16■□□□□ 0.5
BRCA1P38398 AL354893.2-201ENST00000423075 529 ntTSL 5 BASIC18.16■□□□□ 0.5
BRCA1P38398 RNF216P1-212ENST00000493407 659 ntTSL 3 BASIC18.16■□□□□ 0.5
BRCA1P38398 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC18.16■□□□□ 0.5
BRCA1P38398 AP003398.1-201ENST00000531124 318 ntBASIC18.16■□□□□ 0.5
BRCA1P38398 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC18.16■□□□□ 0.5
BRCA1P38398 BX088702.1-201ENST00000610784 235 ntBASIC18.16■□□□□ 0.5
BRCA1P38398 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC18.16■□□□□ 0.5
BRCA1P38398 TREX1-206ENST00000629913 945 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
BRCA1P38398 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 ZNF7-202ENST00000446747 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 API5-202ENST00000420461 2009 ntTSL 2 BASIC18.16■□□□□ 0.5
BRCA1P38398 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 GDPGP1-201ENST00000329600 1193 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
BRCA1P38398 GUSBP10-201ENST00000417412 665 ntBASIC18.16■□□□□ 0.5
BRCA1P38398 ITGA9-AS1-205ENST00000438136 578 ntTSL 4 BASIC18.16■□□□□ 0.5
BRCA1P38398 AL135901.1-201ENST00000451812 333 ntBASIC18.16■□□□□ 0.5
BRCA1P38398 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC18.16■□□□□ 0.5
BRCA1P38398 ATP6V0A2-207ENST00000544833 1013 ntTSL 2 BASIC18.16■□□□□ 0.5
BRCA1P38398 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC18.16■□□□□ 0.5
BRCA1P38398 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BRCA1P38398 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC18.15■□□□□ 0.5
BRCA1P38398 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 OR2V1-201ENST00000329365 948 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
BRCA1P38398 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC18.15■□□□□ 0.5
BRCA1P38398 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC18.15■□□□□ 0.5
BRCA1P38398 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC18.15■□□□□ 0.5
BRCA1P38398 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 AC025048.2-201ENST00000590744 786 ntTSL 2 BASIC18.15■□□□□ 0.5
BRCA1P38398 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC18.15■□□□□ 0.5
BRCA1P38398 AC018695.6-201ENST00000614011 534 ntBASIC18.15■□□□□ 0.5
BRCA1P38398 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC18.15■□□□□ 0.5
BRCA1P38398 AC114296.1-204ENST00000637197 1173 ntAPPRIS P5 TSL 5 BASIC18.15■□□□□ 0.5
BRCA1P38398 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 TMBIM7P-202ENST00000641474 1516 ntBASIC18.15■□□□□ 0.5
BRCA1P38398 ZNF436-AS1-201ENST00000335648 2547 ntBASIC18.15■□□□□ 0.5
BRCA1P38398 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BRCA1P38398 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC18.15■□□□□ 0.5
BRCA1P38398 AHCYP4-201ENST00000419201 1315 ntBASIC18.14■□□□□ 0.5
BRCA1P38398 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC18.14■□□□□ 0.5
BRCA1P38398 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
BRCA1P38398 FAS-202ENST00000352159 1722 ntTSL 5 BASIC18.14■□□□□ 0.5
BRCA1P38398 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
BRCA1P38398 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
BRCA1P38398 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.5
BRCA1P38398 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
BRCA1P38398 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 PTPA-215ENST00000432124 567 ntTSL 4 BASIC18.14■□□□□ 0.49
BRCA1P38398 HMGB1P24-201ENST00000611897 328 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 CD79B-201ENST00000006750 1269 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A21P-201ENST00000510875 1396 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A15P-201ENST00000514465 1395 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A6P-201ENST00000515148 1394 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A16P-201ENST00000526662 1395 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A9P-201ENST00000527940 1395 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A5P-201ENST00000528738 1395 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A14P-201ENST00000530386 1395 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 FAM90A13P-201ENST00000534703 1395 ntBASIC18.14■□□□□ 0.49
BRCA1P38398 ZC3H14-204ENST00000336693 2007 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
BRCA1P38398 APOA1-203ENST00000375320 940 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
BRCA1P38398 RPA3-202ENST00000396682 847 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
BRCA1P38398 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 TAC3-208ENST00000441881 731 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 ASGR2-203ENST00000446679 879 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 LINC01563-201ENST00000456235 750 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 AREG-202ENST00000502307 956 ntTSL 5 BASIC18.14■□□□□ 0.49
BRCA1P38398 JMJD8-203ENST00000562824 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
BRCA1P38398 SNHG15-205ENST00000580458 710 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 TAC3-211ENST00000615887 1120 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 AQP7-213ENST00000624075 1270 ntTSL 2 BASIC18.14■□□□□ 0.49
BRCA1P38398 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
BRCA1P38398 MYBPHL-201ENST00000357155 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
BRCA1P38398 METTL7B-202ENST00000614691 1368 ntTSL 5 BASIC18.13■□□□□ 0.49
BRCA1P38398 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC18.13■□□□□ 0.49
BRCA1P38398 SPO11-203ENST00000371263 1834 ntAPPRIS P4 TSL 1 (best) BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms