Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
MSX1P28360 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.18□□□□□ -0.14
MSX1P28360 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.17□□□□□ -0.14
MSX1P28360 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 IQCF3-202ENST00000440739 505 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC14.17□□□□□ -0.14
MSX1P28360 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.17□□□□□ -0.14
MSX1P28360 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC14.17□□□□□ -0.14
MSX1P28360 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 CLK3P2-201ENST00000427566 1453 ntBASIC14.17□□□□□ -0.14
MSX1P28360 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 MMRN2-201ENST00000372027 4375 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
MSX1P28360 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
MSX1P28360 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
MSX1P28360 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
MSX1P28360 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 AC234783.1-201ENST00000441761 496 ntBASIC14.16□□□□□ -0.14
MSX1P28360 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 AC007389.4-201ENST00000454674 793 ntBASIC14.16□□□□□ -0.14
MSX1P28360 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.16□□□□□ -0.14
MSX1P28360 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 AL512343.1-201ENST00000605837 169 ntBASIC14.16□□□□□ -0.14
MSX1P28360 AC025181.2-201ENST00000606994 802 ntBASIC14.16□□□□□ -0.14
MSX1P28360 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 PPP1R26-204ENST00000604351 4640 ntAPPRIS P1 TSL 3 BASIC14.16□□□□□ -0.14
MSX1P28360 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC14.16□□□□□ -0.14
MSX1P28360 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.16□□□□□ -0.14
MSX1P28360 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
MSX1P28360 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 ADCY6-201ENST00000307885 6464 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
MSX1P28360 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms