Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 PDE8A-203ENST00000394553 3912 ntAPPRIS P4 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SHOX2O60902 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 PNMA5-205ENST00000535214 3198 ntAPPRIS P2 TSL 3 BASIC15.46■□□□□ 0.07
SHOX2O60902 PMS2P7-201ENST00000506558 1336 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 LRSAM1-203ENST00000373322 2849 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 HOXA3-207ENST00000612286 3396 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHOX2O60902 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SHOX2O60902 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC15.46■□□□□ 0.07
SHOX2O60902 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC15.46■□□□□ 0.07
SHOX2O60902 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 EEF1DP4-201ENST00000446006 880 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 KRT18P35-201ENST00000510488 1269 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 NMU-205ENST00000511469 756 ntTSL 3 BASIC15.46■□□□□ 0.07
SHOX2O60902 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.46■□□□□ 0.07
SHOX2O60902 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
SHOX2O60902 AL078644.1-201ENST00000609881 752 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 ACTL9-202ENST00000612068 1252 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 FOXF1-201ENST00000262426 3516 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 ZNF362-205ENST00000539719 3106 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 REXO1L4P-201ENST00000605109 1937 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 TCAM1P-207ENST00000485295 1537 ntBASIC15.46■□□□□ 0.07
SHOX2O60902 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC15.46■□□□□ 0.07
SHOX2O60902 C11orf21-201ENST00000381153 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 AC040174.1-201ENST00000563003 2571 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 GCKR-201ENST00000264717 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SHOX2O60902 CLCN4-201ENST00000380829 2418 ntTSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 ACTG1-206ENST00000573283 2002 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SHOX2O60902 RUBCNL-201ENST00000378781 3322 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.06
SHOX2O60902 SLC9B1-201ENST00000296422 1879 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
SHOX2O60902 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC15.46■□□□□ 0.06
SHOX2O60902 STK26-202ENST00000394334 3288 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
SHOX2O60902 AC012508.2-201ENST00000567613 1472 ntBASIC15.46■□□□□ 0.06
SHOX2O60902 AL139193.2-201ENST00000553712 1954 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 SLC38A4-201ENST00000266579 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 NFE2L1-218ENST00000583378 2051 ntTSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 TMEM25-201ENST00000313236 2409 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 CCT4-201ENST00000394440 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 FFAR4-201ENST00000371481 3605 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 NIPAL3-203ENST00000358028 1757 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 KRTAP19-7-201ENST00000334849 440 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
SHOX2O60902 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
SHOX2O60902 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 CBR1-203ENST00000439427 1024 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 RIN3-211ENST00000557762 517 ntTSL 3 BASIC15.45■□□□□ 0.06
SHOX2O60902 ANAPC11-210ENST00000574924 722 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 ZBTB7B-202ENST00000368426 3594 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 RILPL1-202ENST00000376874 3932 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 TP73-213ENST00000604479 1623 ntTSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC15.45■□□□□ 0.06
SHOX2O60902 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 CETP-203ENST00000566128 1733 ntTSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 LIMD1-202ENST00000440097 2773 ntTSL 5 BASIC15.45■□□□□ 0.06
SHOX2O60902 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 NR1H3-203ENST00000405853 1480 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 TP73-207ENST00000378290 1831 ntTSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 LDHA-203ENST00000379412 1922 ntAPPRIS P1 TSL 2 BASIC15.45■□□□□ 0.06
SHOX2O60902 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
SHOX2O60902 TMEM25-204ENST00000359862 2395 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHOX2O60902 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
SHOX2O60902 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHOX2O60902 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC15.44■□□□□ 0.06
SHOX2O60902 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHOX2O60902 NAALADL1-202ENST00000355721 2100 ntTSL 5 BASIC15.44■□□□□ 0.06
SHOX2O60902 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
SHOX2O60902 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 60.8 ms