Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 TAF8-202ENST00000372978 794 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC19.06■□□□□ 0.64
CACNA1FO60840 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC19.06■□□□□ 0.64
CACNA1FO60840 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC19.06■□□□□ 0.64
CACNA1FO60840 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.06■□□□□ 0.64
CACNA1FO60840 BX088702.1-201ENST00000610784 235 ntBASIC19.06■□□□□ 0.64
CACNA1FO60840 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 LINC01101-201ENST00000622953 1884 ntBASIC19.06■□□□□ 0.64
CACNA1FO60840 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
CACNA1FO60840 RUFY2-204ENST00000399200 2685 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
CACNA1FO60840 MC1R-204ENST00000639847 2567 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 AL008718.2-201ENST00000609206 1313 ntBASIC19.05■□□□□ 0.64
CACNA1FO60840 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.05■□□□□ 0.64
CACNA1FO60840 RTP1-201ENST00000312295 2217 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1FO60840 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
CACNA1FO60840 KRT18P36-201ENST00000411618 1276 ntBASIC19.05■□□□□ 0.64
CACNA1FO60840 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC19.05■□□□□ 0.64
CACNA1FO60840 RPL13AP20-201ENST00000459725 609 ntBASIC19.05■□□□□ 0.64
CACNA1FO60840 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.05■□□□□ 0.64
CACNA1FO60840 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC19.05■□□□□ 0.64
CACNA1FO60840 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CACNA1FO60840 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 EDDM13-208ENST00000637802 854 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1FO60840 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
CACNA1FO60840 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1FO60840 AC008741.2-201ENST00000612792 3115 ntBASIC19.05■□□□□ 0.64
CACNA1FO60840 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
CACNA1FO60840 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC19.05■□□□□ 0.64
CACNA1FO60840 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 AC092800.1-201ENST00000449492 579 ntTSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.04■□□□□ 0.64
CACNA1FO60840 EEF1DP1-201ENST00000585891 896 ntBASIC19.04■□□□□ 0.64
CACNA1FO60840 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC19.04■□□□□ 0.64
CACNA1FO60840 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 Z98259.2-201ENST00000641583 609 ntBASIC19.04■□□□□ 0.64
CACNA1FO60840 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CACNA1FO60840 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC19.04■□□□□ 0.64
CACNA1FO60840 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 TM9SF1-202ENST00000396854 2055 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 RABL6-211ENST00000629216 1416 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.04■□□□□ 0.64
CACNA1FO60840 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
CACNA1FO60840 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
CACNA1FO60840 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 MAGED4B-207ENST00000485287 2618 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 C11orf16-201ENST00000326053 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC19.04■□□□□ 0.64
CACNA1FO60840 SALL4P5-201ENST00000419001 1760 ntBASIC19.04■□□□□ 0.64
CACNA1FO60840 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CACNA1FO60840 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CACNA1FO60840 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CACNA1FO60840 LTF-203ENST00000426532 2494 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 AC018442.1-201ENST00000421439 2061 ntBASIC19.03■□□□□ 0.64
CACNA1FO60840 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC19.03■□□□□ 0.64
CACNA1FO60840 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC19.03■□□□□ 0.64
CACNA1FO60840 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CACNA1FO60840 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC19.03■□□□□ 0.64
CACNA1FO60840 CD74-212ENST00000524315 584 ntTSL 5 BASIC19.03■□□□□ 0.64
CACNA1FO60840 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC19.03■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms