Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 FUZ-207ENST00000526575 482 ntTSL 4 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 PTP4A1P2-201ENST00000546033 454 ntBASIC18.17■□□□□ 0.5
RNF41Q9H4P4 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 PRSS30P-206ENST00000641773 873 ntBASIC18.17■□□□□ 0.5
RNF41Q9H4P4 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 AL109954.1-202ENST00000564051 2148 ntBASIC18.17■□□□□ 0.5
RNF41Q9H4P4 AC063926.2-201ENST00000623766 1308 ntBASIC18.17■□□□□ 0.5
RNF41Q9H4P4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 USE1-206ENST00000595101 1776 ntTSL 2 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
RNF41Q9H4P4 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AL158070.2-201ENST00000623713 1621 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AC138035.3-201ENST00000622706 2791 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 PGR-210ENST00000619228 3038 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AC114812.1-204ENST00000449669 728 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AC093433.1-201ENST00000458048 571 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 GIMAP3P-201ENST00000495150 836 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AC022137.2-201ENST00000503482 481 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 TDH-203ENST00000531764 1110 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 AL035252.4-201ENST00000624174 288 ntBASIC18.16■□□□□ 0.5
RNF41Q9H4P4 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC18.16■□□□□ 0.5
RNF41Q9H4P4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 KRT18P25-201ENST00000508931 1278 ntBASIC18.15■□□□□ 0.5
RNF41Q9H4P4 CCKBR-202ENST00000525014 792 ntTSL 4 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 KSR1-207ENST00000578981 748 ntTSL 4 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 MROH4P-201ENST00000431302 1578 ntBASIC18.15■□□□□ 0.5
RNF41Q9H4P4 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 HYMAI-201ENST00000635591 3347 ntBASIC18.15■□□□□ 0.5
RNF41Q9H4P4 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF41Q9H4P4 AC092384.3-202ENST00000564646 2873 ntBASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms