Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 AZGP1P1-201ENST00000411909 902 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 SPCS2P4-201ENST00000436160 681 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 ALG1L5P-201ENST00000482043 771 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 RNF34-208ENST00000555076 593 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 INO80E-210ENST00000567705 880 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 AP000842.3-202ENST00000569238 1080 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 AC008267.7-201ENST00000624570 1194 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 AC134684.3-201ENST00000641758 218 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ADAMTS14-201ENST00000373207 5260 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ZNF74-209ENST00000611540 3714 ntAPPRIS P2 TSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 CICP14-201ENST00000629111 2732 ntBASIC13.58□□□□□ -0.24
NKX3-1Q99801 SLC38A5-212ENST00000619100 2100 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 SLC38A5-214ENST00000622196 2100 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 TAB1-201ENST00000216160 3237 ntAPPRIS P1 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 NTNG1-208ENST00000370074 3048 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 FBLN2-203ENST00000404922 4318 ntAPPRIS P4 TSL 5 BASIC13.58□□□□□ -0.24
NKX3-1Q99801 SMARCA2-214ENST00000450198 5602 ntTSL 1 (best) BASIC13.58□□□□□ -0.24
NKX3-1Q99801 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 DEF8-210ENST00000563594 4450 ntAPPRIS P4 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 SYT5-201ENST00000354308 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PRLH-201ENST00000165524 264 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 NEK7-201ENST00000367383 586 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PP14571-201ENST00000404327 934 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ADH5P3-201ENST00000433842 1137 ntBASIC13.57□□□□□ -0.24
NKX3-1Q99801 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 CEND1P1-201ENST00000451006 455 ntBASIC13.57□□□□□ -0.24
NKX3-1Q99801 PHKG1P2-201ENST00000457537 863 ntBASIC13.57□□□□□ -0.24
NKX3-1Q99801 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 AC097359.3-201ENST00000603982 1210 ntBASIC13.57□□□□□ -0.24
NKX3-1Q99801 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 PALD1-201ENST00000263563 4555 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
NKX3-1Q99801 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 CDH20-201ENST00000262717 3882 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ANKMY1-204ENST00000391987 3221 ntTSL 5 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.57□□□□□ -0.24
NKX3-1Q99801 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC13.57□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms