Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CCDC42Q96M95 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 GTF2H2C-210ENST00000510979 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 SEMA4F-210ENST00000611975 6007 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 PLEKHN1-203ENST00000379410 2404 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 B4GALT3-213ENST00000622395 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 MIR940-201ENST00000401276 94 ntBASIC16.73■□□□□ 0.27
CCDC42Q96M95 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 GHSR-202ENST00000427970 912 ntBASIC16.73■□□□□ 0.27
CCDC42Q96M95 TARDBPP1-201ENST00000442013 1203 ntBASIC16.73■□□□□ 0.27
CCDC42Q96M95 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 ALG1L8P-201ENST00000533887 760 ntBASIC16.73■□□□□ 0.27
CCDC42Q96M95 BANF1P1-201ENST00000553684 263 ntBASIC16.73■□□□□ 0.27
CCDC42Q96M95 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 AC011467.4-201ENST00000594891 528 ntBASIC16.73■□□□□ 0.27
CCDC42Q96M95 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC16.73■□□□□ 0.27
CCDC42Q96M95 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CCDC42Q96M95 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 STAM-202ENST00000377524 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 AP000845.1-201ENST00000581677 2131 ntBASIC16.72■□□□□ 0.27
CCDC42Q96M95 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 HTR5BP-201ENST00000430851 1154 ntBASIC16.72■□□□□ 0.27
CCDC42Q96M95 AC005237.2-201ENST00000434368 219 ntBASIC16.72■□□□□ 0.27
CCDC42Q96M95 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 TSFM-210ENST00000550559 897 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
CCDC42Q96M95 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC16.72■□□□□ 0.27
CCDC42Q96M95 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
CCDC42Q96M95 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC16.71■□□□□ 0.27
CCDC42Q96M95 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms