Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 SPRY4-202ENST00000434127 2379 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 PES1-201ENST00000335214 1988 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 SIGLEC9-202ENST00000440804 1960 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 RN7SL589P-201ENST00000481268 310 ntBASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 YBX1P5-201ENST00000509441 847 ntBASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 FAM86C2P-203ENST00000528684 1004 ntBASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 TOP3B-201ENST00000357179 2863 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 ZFAND6-222ENST00000613266 1729 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 UXT-AS1-201ENST00000590504 1525 ntBASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 ABR-228ENST00000574437 3196 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 NRG2-209ENST00000541337 3723 ntTSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 SLC1A7-206ENST00000620347 2873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
PPP4R4Q6NUP7 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 TJP3-202ENST00000541714 3350 ntAPPRIS P3 TSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 PLXNB1-204ENST00000456774 5859 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 NDFIP2-205ENST00000612570 4648 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 AP001160.2-201ENST00000596071 487 ntBASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 AC004835.2-201ENST00000603762 682 ntBASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 NFATC3-203ENST00000349223 6328 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 KIF21B-201ENST00000332129 9897 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
PPP4R4Q6NUP7 OXTR-201ENST00000316793 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 82.4 ms