Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AC006449.6-201ENST00000612330 2296 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 REPIN1-202ENST00000425389 2876 ntAPPRIS P3 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AL139010.1-201ENST00000454878 894 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 MIR4750-201ENST00000584564 56 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AL049840.4-201ENST00000602422 811 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AC005695.3-201ENST00000614522 232 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AL158212.4-201ENST00000624062 1286 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 PAUPAR-201ENST00000630360 2965 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AL592424.1-201ENST00000563624 1536 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AL589702.1-201ENST00000641229 1509 ntBASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
COL28A1Q2UY09 AC092384.3-202ENST00000564646 2873 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SDHAF4-201ENST00000370474 1196 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 CD8A-204ENST00000409781 597 ntAPPRIS ALT2 TSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 HLA-DQB2-229ENST00000411527 1059 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SOCS2P1-201ENST00000417727 557 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 PTK7-212ENST00000476760 902 ntTSL 2 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 PFN2-215ENST00000497148 743 ntTSL 4 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 AP006547.1-201ENST00000563435 692 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 AC009486.1-201ENST00000569860 813 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 MIR3619-201ENST00000579667 83 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 MFSD11-218ENST00000591864 446 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 YIF1B-215ENST00000592246 936 ntTSL 3 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 AL391069.4-201ENST00000609583 481 ntBASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
COL28A1Q2UY09 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms