Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 TFR2-201ENST00000223051 2888 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC11.69□□□□□ -0.54
FOXA3P55318 DUSP5P1-201ENST00000441325 1139 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 FAM185BP-201ENST00000443595 716 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 KRT18P34-201ENST00000488218 1270 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC11.69□□□□□ -0.54
FOXA3P55318 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC11.69□□□□□ -0.54
FOXA3P55318 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 SART3-203ENST00000546611 1184 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 CIPC-205ENST00000555437 566 ntTSL 3 BASIC11.69□□□□□ -0.54
FOXA3P55318 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 RN7SL850P-201ENST00000579959 291 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 AC008667.4-201ENST00000607370 168 ntBASIC11.69□□□□□ -0.54
FOXA3P55318 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 VGLL3-202ENST00000398399 10400 ntAPPRIS P3 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 SATB2-211ENST00000614512 4972 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 RADIL-201ENST00000399583 3689 ntAPPRIS P1 TSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 TRIM3-215ENST00000639856 2137 ntTSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 SLC35C2-213ENST00000543605 5740 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 LRCH3-206ENST00000438796 7394 ntAPPRIS P5 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 RAPH1-213ENST00000630330 4134 ntAPPRIS ALT2 TSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 FAM98B-202ENST00000397609 4388 ntAPPRIS P2 TSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 GAB2-202ENST00000361507 6092 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 ZNF576-201ENST00000336564 2566 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
FOXA3P55318 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC11.69□□□□□ -0.54
FOXA3P55318 CASKIN2-202ENST00000433559 3950 ntTSL 2 BASIC11.69□□□□□ -0.54
FOXA3P55318 PNPLA3-201ENST00000216180 2805 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 PAPSS2-202ENST00000456849 3856 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 PAN3-AS1-201ENST00000563843 1351 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 AFDN-211ENST00000447894 5475 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
FOXA3P55318 HNRNPUL1-201ENST00000263367 2952 ntTSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 LINC00910-206ENST00000592135 2438 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 PRKD1-209ENST00000616995 3498 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
FOXA3P55318 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC11.68□□□□□ -0.54
FOXA3P55318 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 REXO1L2P-201ENST00000425429 2069 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC11.68□□□□□ -0.54
FOXA3P55318 AC093668.2-201ENST00000481893 3569 ntTSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 AC105052.1-201ENST00000519541 3569 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
FOXA3P55318 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 LAGE3P1-201ENST00000425356 484 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC11.68□□□□□ -0.54
FOXA3P55318 AL031432.2-201ENST00000566714 459 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 AL928711.1-201ENST00000570165 459 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 AL732292.2-201ENST00000609649 430 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 AL355877.3-201ENST00000622820 899 ntBASIC11.68□□□□□ -0.54
FOXA3P55318 CELF1-201ENST00000310513 4583 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC11.68□□□□□ -0.54
FOXA3P55318 PELP1-202ENST00000436683 3524 ntTSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 WSCD2-206ENST00000547525 4481 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 ZNF586-202ENST00000396150 1977 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC11.68□□□□□ -0.54
FOXA3P55318 AC090099.1-203ENST00000527059 2945 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 MAP7-204ENST00000454590 3119 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
FOXA3P55318 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
FOXA3P55318 WDR66-201ENST00000288912 4467 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms